RNA id: TU178484


Basic Information

Item Value
RNA id TU178484
length 384
lncRNA type inter_gene
GC content 0.49
exon number 2
gene id G131937
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 14096615 ~ 14101313 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

atcacacacaataaatcacattataagttgcgtgagcagaacacagcaaccactaccatctgatactggctcgacaagaatccagaagcatagcgaactatgttcatggtccgtgcctcaactgccaagtactcagacgtctacaactcatgagacaaattattacaagagcaggaccacaccaatccccttcatccaaactctaacacaaacttcagtgcaagctcttctcaggggtcatcaggcaggcaccttccttcgtcagtgtttcgctgaattaggcccacgacacctccagaaggctcaacagtgaagtctggcgtcccagacccacccccctccaagcttgctgtagaagcacaaactcactcccttccccacaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU178474 lncRNA upstream 121278 13975074 ~ 13975337 (+) True G131927
TU178472 lncRNA upstream 135322 13960791 ~ 13961293 (+) True G131925
TU178432 lncRNA upstream 303415 13781885 ~ 13793200 (+) True G131895
XR_002650892.1 lncRNA upstream 362556 13731465 ~ 13734059 (+) True LOC111194091
TU178226 lncRNA upstream 806359 13288906 ~ 13290256 (+) True G131738
TU178501 lncRNA downstream 111467 14212780 ~ 14214817 (+) True LOC111194092
XR_002650893.1 lncRNA downstream 111532 14212845 ~ 14214425 (+) False LOC111194092
TU178651 lncRNA downstream 623333 14724646 ~ 14725070 (+) True G132081
TU178689 lncRNA downstream 1045035 15146348 ~ 15147083 (+) True G132110
TU178695 lncRNA downstream 1077543 15178856 ~ 15180434 (+) True G132115
XM_007258790.2 mRNA upstream 799310 13288246 ~ 13297305 (+) True LOC103035899
XM_022677227.1 mRNA upstream 801041 13288244 ~ 13295574 (+) False LOC103035899
XM_007258788.2 mRNA upstream 820296 13261905 ~ 13276319 (+) True taf8
XM_007258785.3 mRNA upstream 846089 13225628 ~ 13250526 (+) True LOC103033882
XM_007246840.3 mRNA downstream 457147 14558460 ~ 14571205 (+) True LOC103038967
XM_007246841.3 mRNA downstream 471995 14573308 ~ 14601283 (+) True LOC103039286
XM_015605191.2 mRNA downstream 471995 14573308 ~ 14601283 (+) False LOC103039286
XM_007246842.3 mRNA downstream 471995 14573308 ~ 14601283 (+) False LOC103039286
XM_022677231.1 mRNA downstream 471995 14573308 ~ 14601283 (+) False LOC103039286
TU178139 other upstream 1155768 12913491 ~ 12940847 (+) True G131677
TU177886 other upstream 2140281 11951588 ~ 11956334 (+) True LOC111194085
TU177643 other upstream 2593892 11491563 ~ 11502723 (+) True G131313
TU176945 other upstream 4168601 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 4224843 9868088 ~ 9871772 (+) True LOC111194075
TU178687 other downstream 1066695 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 1066695 15168008 ~ 15172787 (+) False G132109
XR_002650894.1 other downstream 1081037 15182350 ~ 15183567 (+) True LOC103024219
TU178729 other downstream 1138767 15240080 ~ 15240397 (+) True G132146
TU178747 other downstream 1263166 15364479 ~ 15375581 (+) False fam131c

Expression Profile