RNA id: TU176978


Basic Information

Item Value
RNA id TU176978
length 3727
lncRNA type inter_gene
GC content 0.39
exon number 3
gene id G130884
representative True

Chromosome Information

Item Value
chromosome id NC_035911.1
NCBI id CM008314.1
chromosome length 35718434
location 10007019 ~ 10012404 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CATTATTCAATTACAATTCACTTATTGATGTtgtaattcctggtatttgcttatttatgagTATTTCATCTTTTTCAGTAACAGAGATGCTGTAAAGTATTTTAGAAAATTGTCTTCCaatatattgagtatcgcaAAACCAACATATCCCAGTGTTTAAagaaagtttaaataaaggtacactctatataaaaacacacaaacatactgtTTAATGCATTTCTGCAATACACAATGTGTTTCAAAGCTTCGAGACATTCAGCAACTCGAAGGAAGTATGAGGAAAAATAAATGACTTATGAACGAATGACTTTAACTCAAGCAGTTCCACAGGATGAGGGCATTAGGCGATCGATGCACTGTACACAGATGGCTTCGTCAAATCAGAACATGCACACAAAAGCAATACATTATTAGCCAAGGAAGCAGAGTGTGAGAACAGAATCGAACACAAAGCGAACCGGCCTTCAGCGAagcatcagagagagagagagagttcacacTCCAGATCTTCATGTGACGGTCCAATGATGTTCTGCTTgggtgattaaaaaacaaaataaaaaaataaaaaaatagatccACCGAAATTCGCATTTCCAGACCTGTATAGTGAGCGCTGAAAGAATCAAGCCATTAATTTTGCCATTAAATTAGATATTATTCAGATCATGCACAGAACTTTAGTCtaatcatatatataaaatttgtcttatttatataatcaataaagaaaaaaaaatacatctatgTTTAAGTCTGGGCTTCCATTCCATTTTGcattacaccaaaaaaaaagtttggacgtCTGGAAACCAAGCATTACAGCATTCTGGATCAATCTCTCAATTATCGTAGGTTATTtaggtttaatatgaaCACACCACCAATCAGAAAACTCCCACAACCAAACACCAGCACACACTCTAACCTCCCAACCTTTACATTTTTCTATACATTAAAATGTCCACAATTACAACTTTACATTATAAGTTTACAGGATTTAAATGGTTAGAAAAactattaaagcagcagtctgtaagttttgggaatTTAGAGACCTGAGATCTGGTTAGaatgtataatattattttggcaggagatcactggttcgaatcccagtcatgcagctcgccatcagctaccggagccccgaGAAAGCACAGTtggttgtgctctctctctctctgggtgggtactggtgggcgtctgtgagctgatgtatcggaaccgagtcgctgcgctttcctccgagcgttagctctgtaatgctgcatcagcagcagctcaaaaagaggcggagtctgacttcacatgtatcggaggaggcgtgtgctagtcttcactctcctgatgttggggcatcactggaTGTCTTGGGAAAATAGCTAATGAACAACAATTCAATCCTGTATCAAATCTAGCCTGAAATTGCATTTACTCACActgctttaattaaaaatagctAACTTTAAGGCTTAGCATTTATAGATAAAATACTGAATCTGTATGAGGTGATACTTGGgctgccataaaaaaaaaacaaaaaaaaaacatgtaattatgTTACTAATGCTGCACTCTGTGTATTCAATACTGGagttaaataaagtataatttgTAGATGGGTCTGTAATAGATGTATTGGATTGGTAGATTAAAACTAGAATCAGTCATTATCAGTTAAAGAAATTATAGAACCATTTCACACCAAAACACTCTCATAAatcctatctggatgggattattttctcagggggttctggggtaattcttttgttttatgggggtttttatcctctgtgactttattcccgtccagaacgatcacgtaggtgtttttctcagacgtcctctgagaaaattacaggctgaattatccaTTAGTtctgtccggacgcacatctctcgcgtttaataaaatagctatttgtccactgtcacgcaccgtaattacactttgggagtGTGTTTCCGCGGcgatccatgtaaaaacactacagcgagtgaaaatggaggagctactgaacacgatgtcatgtgaccgagaaatcctaaaactaaaaactcactggttctcctgttttttcaattgcagtccagatgcaggagaAGAAGAGTGAAATaagagtgaaatatttttcacttttcactgaagccaccctgagaaactaatcccatccagataggacTAAAGACTACAGTCTGGgcaattttataaacatttggaaacaaaaaaacatgcatatatattataatagacatattgtcatattgtctattaaaataaacttaattttctagacataaatatatatatataatttgcaaTATAGAGTGCAACAGTCTAAAGGCTAATCTTtgatgtatgtatttatacacATGTTAATGTTTCTGTTCTGCATTACTGTTTTTGCAGTTGACTGgtgttaaatattaaactgtACCTAGCTCAGGATGCAAATCAGTGATGTGTAAAATAAAGCAGTATTTAAAGACCTTTGATGATTGTAagatttttacatatttatatatatattatacttttcCCATAGAAGAACAATTATTTACATCACCTCTGCTTTATGCcgggttcacactacacgactggttGTGCAGAAATCGCGAGTTGTTGAGTTTcactacatgactgatcagCGACACACATTCACAATTTACACTATTTTTCATCATGGGAAACCGCAGACTCAGctggctgctctccagaaacacgtttATCACAAGAACACGCCAAAACTgtggttctctctttctgtgattCCATTGGCAGTATGTAGccactgctcctgactcccagtcgatgactgggtcagatatttaGCATGGCAAAAATTTGCAGGGTGTCGCCGACTGATCTTCAAGATGAGCGTCTTTTAGTAGTTAACACTATGCAACTGAACGAGCACCGAGTGATTCCTGATTTGCCGATCGACGAAAAAATGTTGCTGATTGAAAAACTGGGCTACAAGTAGTACTaggtagtgtgaacctggcattaggcaaGTTCATTTGCTCTCTGTTACTATCAGGACCATCAAAGACCTGGTAACACCTCAAAACAACTCAAAATTCTccccatatacacacacttctctTCATATCAACTCTCTGATGATTTATGAAAGTGACACAGTGTCTACTGTAGAACAGGCGCTAAAAGGCATGAAATAAGAACACAGTGTTTGAGCAAAAGCAGCTCCAACAGAAGGCCGAACCTGACAGAGCATGCTGCACGAGATCATGAAGGAGGAGTATCAGACACATCTGAATGCGTTAAATGCATTAAGAAATATATAGGAGAGGCTTAAGACACACAACATTTCCAGGCACTACTTCAAGCTAACTCTCACAAACtctcacaaactctctctctcacacacacactcaaaaacaaaTGAGCAAATCCAAACTCTGGCAGACAGGAACGTACCCAATCCCTGGGAATATGCGTACACTCGTCTGCCTGTTTAGCTGTTTAGGTGGGCGGAATAaaacttttctgtttttgtttttataaaggaCCGAGGAGAATGTCCTAGAACTCCTCGTGGACGTTGCGGGCATAGTCCATCAGCTTGCTGCCAGTGAAGTACTCGCTGTATTTGAGGATCTCCTCCAGTTCCAGATTGTGGTTCTGGTTCTCGTCAGCCACAGCAATCATTTGCTTGGCCTCGTTCAGAGCGTTGTACTCGTTCATGGGATCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU176939 lncRNA upstream 25184 9978855 ~ 9981835 (+) True G130854
TU176940 lncRNA upstream 28423 9946210 ~ 9978596 (+) True G130855
XR_002650880.1 lncRNA upstream 78786 9922981 ~ 9928233 (+) True LOC103038829
TU176968 lncRNA upstream 86054 9916832 ~ 9920965 (+) False mlh3
TU176952 lncRNA upstream 127442 9878308 ~ 9879577 (+) True G130864
TU177054 lncRNA downstream 53471 10065875 ~ 10066115 (+) True G130935
TU177055 lncRNA downstream 54415 10066819 ~ 10067075 (+) True G130936
TU177057 lncRNA downstream 73168 10085572 ~ 10089354 (+) True G130938
TU177064 lncRNA downstream 122323 10134727 ~ 10191841 (+) True G130944
TU177109 lncRNA downstream 219901 10232305 ~ 10232978 (+) True G130980
XM_022677075.1 mRNA upstream 30412 9929835 ~ 9976607 (+) True LOC103039028
XM_022677074.1 mRNA upstream 31064 9948896 ~ 9975955 (+) False LOC103039028
XM_022677076.1 mRNA upstream 32049 9948897 ~ 9974970 (+) False LOC103039028
XM_007235742.3 mRNA upstream 86024 9911307 ~ 9920995 (+) True mlh3
XM_015602027.2 mRNA upstream 86024 9911307 ~ 9920995 (+) False mlh3
XM_022677090.1 mRNA downstream 9361 10021765 ~ 10060015 (+) True c1qtnf12
XM_022677093.1 mRNA downstream 95762 10108166 ~ 10115520 (+) True LOC103041698
XM_022677101.1 mRNA downstream 234174 10246578 ~ 10263598 (+) False klhl21
XM_022677102.1 mRNA downstream 239832 10252236 ~ 10263598 (+) True klhl21
XM_022677100.1 mRNA downstream 259366 10271770 ~ 10284418 (+) False nol9
TU176945 other upstream 79005 9923017 ~ 9928014 (+) False LOC103038829
XR_002650874.1 other upstream 135247 9868088 ~ 9871772 (+) True LOC111194075
TU176943 other upstream 135428 9856406 ~ 9871591 (+) False LOC111194075
TU176928 other upstream 249668 9756952 ~ 9757351 (+) True G130844
TU176542 other upstream 687444 9316238 ~ 9319575 (+) False nfe2
TU177643 other downstream 1479159 11491563 ~ 11502723 (+) True G131313
TU177886 other downstream 1939184 11951588 ~ 11956334 (+) True LOC111194085
TU178139 other downstream 2901087 12913491 ~ 12940847 (+) True G131677
TU178687 other downstream 5155604 15168008 ~ 15172897 (+) True G132109
TU178688 other downstream 5155604 15168008 ~ 15172787 (+) False G132109

Expression Profile