RNA id: TU305176


Basic Information

Item Value
RNA id TU305176
length 3173
lncRNA type inter_gene
GC content 0.37
exon number 4
gene id LOC113530699
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20058251 ~ 20070248 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCCCCCTCAAAGCCCAACGAAAGCAAAACAATGGCTGAATAAATCGCATAATGGCGTTTTCTCGTCGCTGTCTTCACTTCCGATCCGCGCAGGTTCACAGGCTGAGCGCGTTCGAGCCCTTTGCGGTGTACAATTCCTTGAATTCAAATTACTGGAGACGAAACATCTTTTACTGAAGCCTTCAAGCTCAGGATGCCGAGCGGTAAATGCCAACTACCCATGATGCCCAGCCTAAGGATAGCGGTACTGCTGGCAAGATCCCAGTTAAATGAGTCTGGTCATGAACCTGGATGAGACGCGAGTATGGAGTTTGCTTAAGGTATTGACATGTCACTCAAAACAGTGTTAATCCTACGTGGTTGCATTAATACTGAGGAGTTACCCTCCAATTATTGCCCATTATCACTCAACACAGAGACAAAATATTAGAAGCAAGATTAGCTGCTAGAATTGAAACTGTTATTCACCCAGATCAATCAGGCTTCATTAAAGACAGATAATCAGCCACCAACATGTGCAGACTTCTCAACCTGATACACAATACATCACATAAAGATGTGGATACAGAGAAAGCCTTCAACTGgaaatttgtattattattaccacACTAAATAAATTCAGTTTTGGGGAATCATTTACTCAATCTGGCAATTGTAGAAACATTATAGAAATTGTTCAGAATTATACAGATCATGTCCGTCAGTTTACAGTTTAGTATACGAGAGTTGAGCcatgaaacagaaaataatcaacctatttacttaacatttatgacTAACCTACAACTAAAACTAGTGTTGTAACAGATTAAGCATTTAAACCAGGATGTGTGATAATATTTGAAACAGAATCAAATGATCTAGGTAATATAAAACAAGGTAAAAGGACaaaattccagaaaaaaaaaaaacaggagaaaattAGTACTAACACCATAACACTGGTTGGATGTTTTACCAAGAACTAAAACATCCATGTTAATGTATCCTGTGCTTATACAATGATGACTAAGATATCAAATAAGACACTTTTGACAAAGAAACTCTTGGTTACTTTCATTTTGTAGCTTCAAATCTGCAAAAGTATCAGCGCTAACATGGAGCCAAGCCTCCCAATAAGgttattaatacattatctttGCTTTAGCCTGTACCCCAGTGCTGGTTGCGCTGTGTCTGGGGACATGTGGCATGTAGGACTTCATAAGAAAATGGTGGTTTTTCTGTGAGAACtggaagacttttttttttaaatatttttattagcagAGTCACTAATGGGAAGTGAgctggggtgttttttttatttttcctgaaaCAAAATTGGACAGTGTGCGCCCCCTTGTGTTCAAACGACCAAACGttttcctgttcctgtttttttttccatttacagcagtgaaaaatatgctttaagatgggTAACTGAACAACTTGGGACCTAAAGCTTAGGGGTGGAGTTGTAATTTTTGAGTAAAACTCTCATTTTTagaattataatattattaaaatattagggAATAATGGAGGCTAACTAACACATTGGTGGCTCAGAAGGTCAAATTCGTGTGCAttcaaataaagattttttttttgtttcaataaacccaaaatattttttagtgACAGCTTACGGTATTGAATGGGAGGTCTAAGAAATTCTACTGTCTATTAGTAACTTGGCATTACtaccactactgctactactactacttaatAGCACCTTCAGTTAAATGCCAAATTAAAAAGATATGTTTTCAAACACGTTTTAAAGGAGTGTATGCTTTACTGCTTAATAGAAAAAGGCATTTTGGCATTTGTATATAAGACCTTGAAGGAGAAAGCAGGCTTAGCAATGCTAgcctatttcattttttaaatctacgtTTGCTAATTTATATCAACAGTGATGCTAGGCATAGTGATGTCACACTGGAAGCATACATTCTGTATAgataatatttctatatttgtcAATGTGTAAAGTATGTATATtgtcaaaaatttttttttttctcttttgatttTCAGCAAATAAGCAACTATACTTGTCATGATTGCCACAAGTGTTTTTTCACTGCATCCTCGTAAGCATGGTGTTTGGCTTCTGCCTGGTTCAAGTAATCCAGGATAGGTTGGTTCTCACTAGTGCGGCCTATTCTTGATTACTTGTGTCATGAGGAAGCTGCTAGCAGCAGAATGTGAAGCTCTTCCATGCTGTCATGCTTCATAATGGGATAAGAGGCATGTTTGATCACGTAGTGTTTTATAAGACTGTATGTCGTTACTGAACTAGATGAAAGGAGAAGTGAATTGTAAAGAGGGATAAGCCCTGAAGCAAAGATGTCACTTGCAAGTACTCTTGTTATTCCATCAGTGGTGTACAAGCTTCTCATACAAATGAAAACTGAAGTTTATTGTTGTAAGAAATTATTCCTgatctgtactttttttttttttagttacaacTTTATTTTTCCATCCATTCTCTTCCTTGTCTTTCTTCTACTGGTCTACTACGTAGACTGTACATCTGACTTGCTTTGTTATTCCATGAGTACTATGTGTTCTAGCAGGGCTGAGATGACCTCATCACCCTTACCCTGGATCCTGGTTTTCCCACCCTGTGAAAAGAACTCCATGAGGAACCTCATCATACCAGCTGTCCTCGTCTCGGCTCCAGTGCTGTATTGATGTTAgcatgtggatgatgctgagcTGCTTCACCTCATCGCCTTTGTCTGAGGAGCTGAATTTGCCTGATTGATTTGccaatttaaaaagaaaaaaactaaaccagagctgatatttttacttgaagagtatattattgtatattttctgtAATGAAAAATGGAGACAAGTTACAAATATTGTAGACTGGCTGGAGTCCACCACAATGTACATCTAAAGCTCATCTCTATTAGCAGCatagtttttctgttttcatctgCTCTACTGCACATCTCCGAAGATCTACACATTTAGACCTGAGTATATTGTAACCAACTATGCCAAGTCtgtatcagtaaaaaaaaccctctgaaATCTGTCTCGTGTGttgttataaaatattctgGATCACATAACATCAGAATCTTTTACTATTAAAGTCTTCAGGCATGTAATATGCTGTAAGTACAGTGTCTCTATTAAAGCAACTTTTAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305133 lncRNA upstream 48147 20008639 ~ 20010104 (+) True G257774
TU305143 lncRNA upstream 50097 20007952 ~ 20008154 (+) True G257781
TU305053 lncRNA upstream 312305 19743485 ~ 19745946 (+) True G257713
TU305050 lncRNA upstream 323038 19733351 ~ 19735213 (+) True G257710
TU305000 lncRNA upstream 391666 19660638 ~ 19666585 (+) True G257671
TU305196 lncRNA downstream 28982 20099230 ~ 20099498 (+) True G257814
TU305178 lncRNA downstream 30760 20101008 ~ 20104040 (+) True G257802
TU305179 lncRNA downstream 38142 20108390 ~ 20109226 (+) False G257803
TU305180 lncRNA downstream 38142 20108390 ~ 20109226 (+) True G257803
TU305574 lncRNA downstream 299747 20369995 ~ 20386813 (+) True G258097
XM_026921316.2 mRNA upstream 14584 20037421 ~ 20043667 (+) True sdf4
XM_026921359.2 mRNA upstream 92838 19900014 ~ 19965413 (+) True syt6a
XM_026920864.2 mRNA upstream 209590 19840853 ~ 19848661 (+) True zbtb48
XM_026920527.2 mRNA downstream 49702 20119950 ~ 20127658 (+) True ccnt1
XM_034311543.1 mRNA downstream 59458 20129706 ~ 20138298 (+) True pmelb
XM_034311545.1 mRNA downstream 76930 20147178 ~ 20150405 (+) False LOC113530927
XM_034311546.1 mRNA downstream 78404 20148652 ~ 20155096 (+) False LOC113530927
XM_026921333.2 mRNA downstream 78404 20148652 ~ 20150405 (+) False LOC113530927
TU304946 other upstream 579356 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 1025263 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1146537 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2937310 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3549871 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 320561 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 439996 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 832857 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 832899 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1158072 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00044126 True 97 miRNA 0.48 1 NC_007134.7 24675207 ~ 24675303 (-)
mexican tetra (Astyanax mexicanus) TU176939 True 338 lncRNA 0.43 2 NC_035911.1 9978855 ~ 9981835 (+)