RNA id: TU305143


Basic Information

Item Value
RNA id TU305143
length 203
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G257781
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 20007952 ~ 20008154 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTGGATTTAGcctttgcttcatctctacctaatcagagcgatgcagcagcactttagtcctttagtgtGGCCAGCTCTCTCACCACCTCATGTGTACACTCTtatcaaacagatcagcttcaactttcatgctaataccgccATCAATGCCTTCATGCTACtcatctcatagatcgctaactagctgagccatGTCTCTGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU305053 lncRNA upstream 262006 19743485 ~ 19745946 (+) True G257713
TU305050 lncRNA upstream 272739 19733351 ~ 19735213 (+) True G257710
TU304997 lncRNA upstream 302889 19631599 ~ 19705063 (+) True si:ch73-206d17.1
TU305000 lncRNA upstream 341367 19660638 ~ 19666585 (+) True G257671
TU304947 lncRNA upstream 526377 19481110 ~ 19481575 (+) True G257623
TU305133 lncRNA downstream 485 20008639 ~ 20010104 (+) True G257774
TU305175 lncRNA downstream 50097 20058251 ~ 20070248 (+) False LOC113530699
TU305176 lncRNA downstream 50097 20058251 ~ 20070248 (+) True LOC113530699
XR_003403167.2 lncRNA downstream 50262 20058416 ~ 20070248 (+) False LOC113530699
TU305173 lncRNA downstream 50338 20058492 ~ 20070248 (+) False LOC113530699
XM_026921359.2 mRNA upstream 42539 19900014 ~ 19965413 (+) True syt6a
XM_034311905.1 mRNA upstream 159290 19839711 ~ 19848662 (+) False zbtb48
XM_026920864.2 mRNA upstream 159291 19840853 ~ 19848661 (+) True zbtb48
XM_026920865.2 mRNA upstream 159291 19840853 ~ 19848661 (+) False zbtb48
XM_034311906.1 mRNA upstream 159291 19841695 ~ 19848661 (+) False zbtb48
XM_026921316.2 mRNA downstream 29267 20037421 ~ 20043667 (+) True sdf4
XM_026920527.2 mRNA downstream 111796 20119950 ~ 20127658 (+) True ccnt1
XM_034311543.1 mRNA downstream 121552 20129706 ~ 20138298 (+) True pmelb
XM_034311545.1 mRNA downstream 139024 20147178 ~ 20150405 (+) False LOC113530927
XM_034311546.1 mRNA downstream 140498 20148652 ~ 20155096 (+) False LOC113530927
TU304946 other upstream 529057 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 974964 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 1096238 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2887011 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3499572 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 382655 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 502090 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 894951 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 894993 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1220166 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile