RNA id: TU304997


Basic Information

Item Value
RNA id TU304997
length 2357
lncRNA type sense_over
GC content 0.38
exon number 3
gene id si:ch73-206d17.1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19625529 ~ 19705063 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tcattattataatttatttatcttatttatgcaaatgaaatcaataaataacACTTGCTTTTAGAAACAATTTGTGTGTTGGTGTCTTTCATTGGATTAAAAACTGGaagatttaaatgcaaatttcttCCCTTTTACTTTCTGGGAACCAGACATTAAAATGCTACAACATGATAGAGATACGTGcaaaccaaaaaatatatatcaaagttcaggaaaacctgtagtttttgtagaaaatgtcaaagttCCACAATGTGTAGGCTTTTCTCAGGCTGCCCCACATATTTTCACTAAGAAATTTGAACATACTCATGAAAAGTACATTTCAACAATCATTAATTAAAGTCTCATATTAAGTGTTTCTTCTATAAGGTGCTCCTCCATTTCCTGAACTGGAGCCATCGGAGACGTTCCTCCAGACATTGGCCAATTACAAGCTAAAAAGACCTCCAAACTGTGGAGGGGCACTGTTTGACCTCATGAAATATTGCTGCATGTGGAATTTTAAGGATCGCCCGGCTTATTCTGCTATCATCAAACTGCTGGAGTCGTACATCCACCTGGCTGATGCTAAACCCCTCAGTGCAACACAACACATGGACATTTCTGAATACAGAACGAAGGCAGGAGTTCCACCTTGAGTTTTCAGTGCGTACATAAGGCCGTATTCAGAACTGGCAACTTAAGTCCAAAtgtaaagtcaatatttaaatgGGGAAAGTTGTTTGTAGCTGTTCAGAGACTGGTTATGCAGTTGCTCAAGTCAATTTTCTGGCCTCCAAACATCTGAGATGGGTTTTCAACCACATCTATACTACTACCTTTAAATACAAGCGCCTGCCTTTACAcctgataaaaaaatatatgactgAAGAGCAAgagtcaaatgtaatatgatgtaacataaaagcaagggACAATATCTAATAAGAACCCAGTATATtgccaaaaaattttttttgcatgaattGTCCTAGTTTAGAAAATTTGGTttcaatatggcttccaccctcattattcgGCAgcttatagaatagcacttgatccagcacatgctattattttgctttgttttttaaatcatgggTTGACTAAATCGAGGTCATAAAATCAATGTGTATGTGGAGCAGGCTATTTTTATCATGCCTTTATGTTCGTTTGTGTAATTACTAATATAATGTcaatattttgtaaattcagtgcactctcctgtaaagaaaacgtgcACAAGATTTGAAAAATAAGTTGACTGAGCTCTCTTCTGCTATGCTTGcagtattatttataattttattgataAAAATTTGGTCTTCAAGATAAACATTGTCTTGAATTAAGATGCTGTGATGTCTttggtgtgaaaaaacaaacCTTCTTGTGCACTATAAAAGgatgatattatttattaattcactagtagtgtcatatttatgtgtttaatattgCCCTCAAATGGAATTCTATGtagttttttttggtgtgtatttacagcccagAACATGAATATCAGTGTGACATATTGaggttacatcacactgtcagACAGTAGCGCCAGACTTAATACCTCTCTTCAGTTAAGTCgatatcacacaagaaaaatgggctTAAGTTTAGAAATTTTAGACAAGCTCTGTTTCAGGCAAATTCTGTCCCACGTGTGCAGTTCTCATGCAACTCTCTGAATAGTGTTGAATTATGTTGAGGTCTAAATACCGATGTGTGctatttcagtaataaattctCACTACACAGGCCCACAGTCTCAAATGAACATTGccagaatgcaaaaaaaattgtaaattatgTGCAAGTACTGCACAAAATTGGCCTCTGTCATGTCTGGAGgatgtgcatttaaaaaaaaaaaaaaacaacaacaacaacaacagagagGATCTGAGAACATGCAGCTGCCATGCACAGGAGGATAAATTGACAGGTGAAGCTTGAGGGAGCTTAGAGAACGATGTCTAAGAGAGCGATGCCAGTCACGAACCTGGGACATAGAGGACGGCATTGCCCTCGTCCATGGCGAACATGTTGGAGCCGGTGCACACATAGACCCCGGCGTCTTCAGGTCGAACGTTCTGGATTGTGAGGATGCCGTTGAAATCCATAGCGCGGTCCGGGAGCTTGGCACTGCCCTGACGTGTCCACACGAGCGTGTATGCTGGGAACTGTGTGAGGTTCAAGCATATCAGAAAGAGTAACTATACATTTCCGTAACTAAAACACACCTAGATCTCTtctaatgtaaaatatgaaatgcCAGACATGAAAAAAGAACCGAAGTGGTGTTGAATGCAGGAAACATGGAAGCCCTACTTTGCTCTTGGCTGTGCAGATGAAGTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304947 lncRNA upstream 150024 19481110 ~ 19481575 (+) True G257623
TU304932 lncRNA upstream 160681 19466692 ~ 19470918 (+) True G257608
TU304933 lncRNA upstream 165372 19465730 ~ 19466227 (+) True G257609
TU304535 lncRNA upstream 226078 19403496 ~ 19405521 (+) True G257287
TU304530 lncRNA upstream 237696 19393537 ~ 19393903 (+) True G257283
TU305050 lncRNA downstream 28288 19733351 ~ 19735213 (+) True G257710
TU305053 lncRNA downstream 38422 19743485 ~ 19745946 (+) True G257713
TU305143 lncRNA downstream 302889 20007952 ~ 20008154 (+) True G257781
TU305133 lncRNA downstream 303576 20008639 ~ 20010104 (+) True G257774
TU305175 lncRNA downstream 353188 20058251 ~ 20070248 (+) False LOC113530699
XM_034311885.1 mRNA upstream 166263 19439436 ~ 19465336 (+) True ptpn22
XM_034311659.1 mRNA upstream 299625 19322799 ~ 19331974 (+) True atp6ap1b
XM_026920185.2 mRNA upstream 321765 19295519 ~ 19309834 (+) True itih6
XM_026920186.2 mRNA upstream 321769 19301726 ~ 19309830 (+) False itih6
XM_026920195.2 mRNA upstream 337398 19286212 ~ 19294201 (+) False pfkfb1
XM_026920800.2 mRNA downstream 79508 19784571 ~ 19794997 (+) True zgc:158263
XM_034311905.1 mRNA downstream 134648 19839711 ~ 19848662 (+) False zbtb48
XM_026920864.2 mRNA downstream 135790 19840853 ~ 19848661 (+) True zbtb48
XM_026920865.2 mRNA downstream 135790 19840853 ~ 19848661 (+) False zbtb48
XM_034311906.1 mRNA downstream 136632 19841695 ~ 19848661 (+) False zbtb48
TU304946 other upstream 152704 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 598611 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 719885 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2510658 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3123219 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 685746 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 805181 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1198042 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1198084 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1523257 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile