RNA id: TU304535


Basic Information

Item Value
RNA id TU304535
length 1999
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id G257287
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19403496 ~ 19405521 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAAGACTGTAAAGACCAAACGTATTGAAGAAAATGGGTTTTAGTAATATCAGCACaagcacatttttttcaaactactattctttttttattgtgcaCCGTGACAGCAAAAcagagtaattaaaaaaaaaaaaaaaactcattattAATTATAGGCCAATCCTGAAGTGaaccatttatttaaaaaaataaaaaaaaccatcagATACAAACTTTTCTAGTAATTCATCAGCTTGACGTTCAAGTgatgtaaaaattatttttggctttcttattttgaatgtaaatacaaaaagaatttacagagaaaaagaaacacatctTTTCTTGTGTTACAAGTGTTACCAAAGTGTTATACTATCACATGGACATATATTTCAGACTCTACACATaatttaagcctaataataaatgaataaaaagctttctttattaaacacagAAAACGTAATTATTGATATAGAAAAGCTTTCGGGAAgaagttgtttatttaacatgtatagactctttgtaacagtcaggaagtTTTGGGACTTGCAGTTTCTCGTTAACATTTTCTCGTTTTATTAAAGTCACGAGAAGTtaagggaacgattgtttataactgctataacgtgTTaacagtgataacaggaactaacttgtttcacaaatgttccacaacattaaatgtacctgtAAATGGATAATGTCATTCTTcaataagtaaaaaaattgtaatctatGGCAaattctgtggtataaaagaaataaaacatgctgttataggaaaataatctttggGGGAAAACTACCATGTAGTTAATTACTGCGAACCAGTCCTACTTTTGATTCATCGCCATGACGGCAGGCAAAAATGTTTGAAGAGAGTGTGGCCACTTTTATTGAAATGACAATAACTCTTGAAGGAAAtgagatattttcaccaaacttGGCAGACTTATGTATAGGCTCAGTCTGAGGTCACATGCACAAAATGGTGGCACTTGGCCATGTGGTGGTGctataacagcaaaaaacatgaaattggcACTAAATATGGAACCACTGGTCCAATCGACTTGAAATCTTGCACAAAGTGTCTATGAGGACAGTTGTGAATCTTGAAAAACATGaccaccatcagccaatcaatGTTCAGAAGCTATTAGAGAAGGTTAACAAAGGCCCATATTTGTTAAAATTATCTTGCTTGTTTTCTGATTTAGGTGCTTAGTCTTTTTACGCATGACTTAAAAGGTCTTAAAGTGCTTGAACCCTGacaattgctgcttgcagctatattattaattattctaatgttaaaatgtatttaaataccTGTTTTACATTCCGTTGACCTTCACTGAAGACCCAGGGTGCTAGAGTATGTTTATGTTTAGAACACTTTTCTTTAGAATAATCGACATGATCCATGTCTATGGTCTATGCAATATGGAAATACGCTCTTTAAAAACATGATATGTTTTATCATCTGCTTTGAGTTGTGAGTGCTCCAGGTCAGGGTttctctgactgactgacttaGATCAATCATGACAttattaaataaggaaataatTTTTGTTCATAATAATTTATACAATCTTTATAGTGCATTCTAGTGCAAAGTAaaagctCAGTCTGTGAACTTACCCAAAGTTGGTAAGTGCACACAAACTTGAATCAACATACATTTAGTGCAAACATAACAGAAAAAGGCAAACAACAGAAATCACTCATAACTGAGCTGTCATAGTTTTGCACAAATAGAGAATATTTGTAGAATATCAGCAGACTTTGCTTTTTGAAAAGCAAGCATAAGATTTGTTTACAGATAAATGCTATGGTTATTCAATACCCTGAAGCAAGTTGCCTCGTCCAGATCTTAAGGTAAATTAGCTGGAGAGACTATGGGTCACTATtagtacatgttttttggtgACGTTTCCTCTGTTGTAGGAGCACAGGAGGACATATTGACCAGAGAACAGTGTTCAGGTTTGGAATAGGCTTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304530 lncRNA upstream 9593 19393537 ~ 19393903 (+) True G257283
TU304499 lncRNA upstream 42445 19357511 ~ 19361051 (+) True G257255
TU304502 lncRNA upstream 43756 19354727 ~ 19359740 (+) True G257256
XR_003403138.2 lncRNA upstream 52648 19346311 ~ 19350848 (+) True LOC113530341
TU304489 lncRNA upstream 64660 19289920 ~ 19338836 (+) True G257245
TU304933 lncRNA downstream 60209 19465730 ~ 19466227 (+) True G257609
TU304932 lncRNA downstream 61171 19466692 ~ 19470918 (+) True G257608
TU304947 lncRNA downstream 75589 19481110 ~ 19481575 (+) True G257623
TU304997 lncRNA downstream 226078 19631599 ~ 19705063 (+) True si:ch73-206d17.1
TU305000 lncRNA downstream 255117 19660638 ~ 19666585 (+) True G257671
XM_034311659.1 mRNA upstream 71522 19322799 ~ 19331974 (+) True atp6ap1b
XM_026920185.2 mRNA upstream 93662 19295519 ~ 19309834 (+) True itih6
XM_026920186.2 mRNA upstream 93666 19301726 ~ 19309830 (+) False itih6
XM_026920197.2 mRNA upstream 109295 19286212 ~ 19294201 (+) False pfkfb1
XM_034311885.1 mRNA downstream 33915 19439436 ~ 19465336 (+) True ptpn22
XM_026920204.2 mRNA downstream 220008 19625529 ~ 19633180 (+) False si:ch73-206d17.1
XM_026920800.2 mRNA downstream 379050 19784571 ~ 19794997 (+) True zgc:158263
XM_034311905.1 mRNA downstream 434190 19839711 ~ 19848662 (+) False zbtb48
XM_026920864.2 mRNA downstream 435332 19840853 ~ 19848661 (+) True zbtb48
trnae-cuc_34 other upstream 370508 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 491782 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2282555 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2895116 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 3007284 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 72781 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 985288 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1104723 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1497584 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1497626 20903147 ~ 20905073 (+) False ubxn10

Expression Profile