RNA id: XM_026920186.2


Basic Information

Item Value
RNA id XM_026920186.2
length 3634
RNA type mRNA
GC content 0.47
exon number 14
gene id itih6
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19295519 ~ 19309834 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATGTGGCCGAAGTGAAGGAGAGAGCTGCTGCCAAGAAGATCTACGATGACGCCAAGAAGCAGGGGAAGACAACAGGACTTGTTGCCACCAAGTCAGTCCAAAAGTGTATTTGATACCTCCTCTGCTGGGATTACGCCATGTTTCTTTTGGCATTGACTGAGGAGCGGGAGATTGAGAAGTTTCGGGTGGCTGTCAGCGTGCCTCCTGGAGTCCACATGCACTTTTCCCTGACGTATGAGGAGCTATTGACACGACGGCTGGGGCGCTATGAGCTGGCTTTGGGCCTCAGGCCTGGGCAGCCTGTGCAGAATCTCTCTGTGGATGTTAGTATAGCGGAGAGGAGTGAAATCAGCTTCATCAAAGTGTTACCACTCAGGACCAGTCGTCTGCTTACCAACACTGACCAAGCTGAGGCCAAAGCACCCCCCTCCACTCAGGTGCAGCAGAACCTACACTGTGCTCACATTCATTACAACCCCAGCCTGCAGCAGCAGAGGACCATCTCCCCCAAAGGCATCAATGCAGACTTTGTCCTCCAGTATGACGTAGAGCAAAGAGATCTCATGGGAGACATCCAGGTGCATGACGGTTTCTTTGTTCATTACTTTTCCCCGCGGGGCCTGCCGGTAGTTTCTAAAGATATCATCTTCGTTATTGACATCAGTGGCTCCATGATCGGCACGAAGATCAAACAGACTAAGGCAGCGATATCTACGATCCTGGGTGACCTACGTGAGGGCGACTACTTCAATCTCATTACGTTTTCGGATAAAGTGCAGATCTGGAAGAAAGACCGCACTGTGCTGGCCACAAAGCAGAACATACGGGATGCGAAGGAGTTTGTCAAGAAAATCGTTGCAGATGGCTGGACAAACATCAATGCGGCTCTTCTCTCAGCAGCACAGCTGATCaactcctcctcttcatctccTGCTAACCAATTGTCCACACCACGACGAGTTCCTATGATCGTCTTTCTGACCGATGGAGAGGCTACAATCGGAGTGACTGCACAAGAGGTTATTCTGCATAATGCTCAGAGTGCGCTGGGCTCAGTCTCTCTGTTTGCCCTGGCATTCGGAGATGATGCAGATTTTCCTCTACTGAAACGATTGGCTTTGGAGAACCGTGGGATAGCACGGATGGTATATGAGGATGCTGATGCTGCACTCCAATTAAAGGGTTTCTATGATGAGGTAGCGAGTCCACTACTGTCAGATATCCAGCTTTCCTACCTTGAAGACCAAGCTTATGATGTCACATGGTCCCTTTTCCCCAACTACTTCCAAGGCTCTGAGCTGGTAGTCACTGGGAAGATTAAGCCAGACATACAGGATCTGAAAGTTTCATTGACAGCAAGTGGCACAAAGCAGAAGGTGAAGGTAGAGAGTGAGTTTGTACTGGCCAAGCTTGAAGTAAATGAGACTTCAGCATCACTGGGGTGTGCCAGGGAACTGCATGGCATCTCCAACTTTATGCATCGCCTCTGGGCCTATTACACTATCAAGGAGCTTTTGTTGGCTAAACTCAACAGCTCAGATCCATTAGTACAACGCTTGCTAGCAGAGAAGGCCACCAACCTTTcactaaaatataattttgtcaCTCCAGTCACCTCTTTGGTGGTGGTTAAACCAGATATTGATGAGCCAAATCCAACTACTGTCTCTACAACCACGACTACACCCAAGCCTGTCACTACCACTACAGCAAGTGTGACCACCACACCTACACAAATGTCAAGTACCTCTAAAATGACTTCTGCTACCGAGGCATTGATCAAAAAGCCAAGCAAACCTTTAAAGCCCAGTAAACCTTCTCTCACCAAACCCCTTCGACCAGACCTGCCTATTCCTGGACATCCAATAAATACTCCTTCTCCAGACAAAAATGTAGCACCCAAGAGGACAACACCTTTACCACACAACTTATCTAAGACCACCTCTGCCCCTCTTTTGAGCAAAGCTCCCACTGTTCCCACCAGCACCATGAGAACTGATGCTCCCACTTTCCTCCCACTCAATTCCACTAGCACAGCTTCTCCACCTCTCAAGAGTTCAGTCGCAATGCCCAATGTGGCTGAAACCACAACACCACCCAGCTCAGAGAAACATCAAGTCCTGCCTCTCGAGAAACCCGCATTCTTATCTGACACTGACAGTTTTGCCACACCTGATGTTCCTGCAGTGCAGCCAGATTTTCAGGAAGTCCCTTCATCAAATGCTTCACCTGAAGATCCTGATGaggaaataaacatctccactcttctggctGCCTCCTTTGCCCCTATGCCAGGCATGACAGATGCACCCAATCTCTGGGAAGCTACTGGTATTTTAGATGTTTCTACAGCCATCCTGACAAAAGATGCTGATGATATCAAAGAGTATGATGTCTCGTATGAGTACGACACTGACTACATCATCCATTATGATTCCTccacACCAGACGACACAGATATCATAAGTTCTGTGGGAATCTTCTCCTCCTCAGtgGATGGAGACCCCCATTTTGTTGTTATGCTCCCAAAGATACATGAAAATCTGTGTTTTACTGTTGATGGCGAGGCCAATGATGTGTTACGTCTTCTGGAGGACCCAGTCACAGGCATTACAGTGAATGGCCATTTGATGTTGGCTCCTCCTAAGATTGGAATCGAGGACCGCACTCGCACCTTCTTTGACAAGATAACCATCAGAATTTCCAAAGGTGGAATCAAGATCACCGTTATGATAGACTCAGTGGTAGTGAAGGGAGAAGGGCTTGAAACTCTGTCTACCAGACAGGAGGGATCTGTGACACTCCCAGGCTTGAAGATTGTGCTCGATGGACACCAGAGCTGCTGGATTGAGCTCGGAAAAGGCGTCGTGTTCCTGGTTCTGATCCATCGATATAGTCACCCCACCTATTTCCAGATGGAGCATCTAGGATTCTACATAGCCGATGGCGAGGGGTTATCTTCTTTAACGCAAGGTCTACTCGGCCAGTTCCAGCACAGCACCATAGACGTGGTGAGGATAACAGACAGACATGGTGCCATGTTCCACCACGGTCAGACCAGCAACAACAGCACTCTGGCCTTGGGATTACTCATGAAAGGGGACGAACAAATTCCAGTCTCTTTACAGGATAAGGCTTTGAAGAACACACTAAATAAGCGCCACTCGGCCCAGTGCTGGGTGGTGCCCAAGGTGGAAGTGGAACGGCTCCTGGAGCGGCCTTACCAAAGCTATGTGGTGGATGACCTTTAAATGCCCTGTGGCTACATTTCAAGCTCATGTCTACTGATTCATAGCAGGGCCATAGAAGAATATAGGACACTACAGTGCGAGGGTGGCATATTTACCCTCAGTTAACATGTAAGCATAGAGGGTGTTCAGTATGGAAAAGTGACACTGTGGAAAGTTTTAATGTCTGTATAGAAAATACGACGAGTTGCTTAAAGACTGAAGAATCCAGGAGTTGAATCGGATTGCACTCAGGATGAAAAGCTACAGTCTGAACAATCATACCATTAAGAACTATATTTCAGGTACTGATTTTGTTTCaggaaatgataaaaatatatagattacATTTCAGAACAAGGATTTTTATGTAATGCTTATAGTTATTTTGTAGAAACATATATGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304485 lncRNA upstream 49929 19251445 ~ 19251797 (+) True G257242
TU304477 lncRNA upstream 56019 19243185 ~ 19245707 (+) True G257234
TU304475 lncRNA upstream 60158 19241112 ~ 19241568 (+) True G257232
TU304478 lncRNA upstream 66465 19233003 ~ 19235261 (+) True G257235
TU304470 lncRNA upstream 79221 19203336 ~ 19222505 (+) True pkig
XR_003403138.2 lncRNA downstream 36481 19346311 ~ 19350848 (+) True LOC113530341
TU304502 lncRNA downstream 44897 19354727 ~ 19359740 (+) True G257256
TU304499 lncRNA downstream 47681 19357511 ~ 19361051 (+) True G257255
TU304530 lncRNA downstream 83707 19393537 ~ 19393903 (+) True G257283
TU304535 lncRNA downstream 93666 19403496 ~ 19405521 (+) True G257287
XM_034311658.1 mRNA upstream 7525 19283497 ~ 19294201 (+) True pfkfb1
XM_034311659.1 mRNA downstream 12969 19322799 ~ 19331974 (+) True atp6ap1b
XM_034311885.1 mRNA downstream 129606 19439436 ~ 19465336 (+) True ptpn22
XM_026920204.2 mRNA downstream 315699 19625529 ~ 19633180 (+) False si:ch73-206d17.1
XM_026920800.2 mRNA downstream 474741 19784571 ~ 19794997 (+) True zgc:158263
XM_034311905.1 mRNA downstream 529881 19839711 ~ 19848662 (+) False zbtb48
trnae-cuc_34 other upstream 268738 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 390012 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2180785 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2793346 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2905514 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 168472 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1080979 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1200414 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1593275 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1593317 20903147 ~ 20905073 (+) False ubxn10

Expression Profile