RNA id: XM_034311658.1


Basic Information

Item Value
RNA id XM_034311658.1
length 1885
RNA type mRNA
GC content 0.46
exon number 14
gene id pfkfb1
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19283497 ~ 19294201 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGGTGACCTCAGAAGGAGCAGAACTCACAGGAGACTGCTTTGTGTATaagtgtgagagtgtgactTGGTCACTTTAGGCTCAGACGAAGAACTAGGCAGTTAAATGTTACATGACATGTcgacagaacagacagaactCATGCAGACCCCATTGCTGAAAATCTGGGTGCCTGGGGCTGGAGGCTCACTGAGCCAAAGGAGAGGCTGAAAAGTGTACTGTTGTTCTCATTGTGGTATTCACTATTCTGCAGCGTCACGACCCCAGTTTACAAACTCTCCAACCATGATTGTAATGGTGGGGCTGCCTGCCAGAGGAAAGACTTATATCTCCAGGAAGCTTACACGCTACCTCAACTGGATTGGAGTCCCAACTCAAGTCTTTAATTTGGGCCAGTATAGAAGAGAAGCAGTCAAGAGTTACAAAAACTATGAATTCTTCCATCCAGATAATGAAGAGGCCATGAAGATCCGCAGGGCTTGTGTTTTAAAGGCCCTCAAGGACATTGCCAACTACTTCACTAAGGAGCAGGGACAAGTAGCAGTATTTGATGCCACTAACACGacaaaggagaggagaggaatcATCACCAGCTTTGCCAAGGAGAAGGGCTACAAGgtgtTTTTTATTGAGTCAATTTGTGATGACCCAGAAATTATTGAGGCAAATATAATGGAGGTGAAACTGAGTAGCCCGGACTACGAGAACTGCGACAAAGACAAGGTGGTGGAGGATTTTCTGAAGCGCATTGAATGCTACAAGATGACTTACATTCCCCTTGATGATGAAAACGACAGGAATATGTCCTACATTAAGATCTTCAACGTGGGCACCAGATATCTGGTGAACAGGGTTCAGGACCATATCCAGAGCCGTATAGTGTACTACCTCATGAACATCCACGTCACACCACGCTCCATCTACCTCAGCAGGCATGGGGAGAGcgagctgaacctgctgggccgcATCGGAGGAGACTCTGGCCTTTCTTCACAAGGCAAAAGGTATGCTAGGGCTCTGTCCGAGTTCATCAGAAATCAGGACATAAAGGACCTAAAGGTGTGGACGAGTCACTTTAAAAGGACCATACAGACAGCTGAGGCTCTGGGAGTCACTTATGAGCAGTGGAAAGCCCTGAATGAGATCGATGCTGGCGTGTGTGAGGAGATGACTTATGAAGAGATCCAGGAGAACTATCCGGAGGAGTTTGCGATGAGAGACCAAGACAAGTATCGGTACAGATATCCCAAAGGAGAGTCTTACGAAGACCTGGTGCATCGTCTAGAGCCGGTCATCATGGAGCTGGAGAGACAGGAGAATGTGCTGGTTATCTGCCACCAGGCAGTCATGCGTTGTCTGCTGGCCTATTTTCTGGACAAAAGCGCAGAGGAACTTCCATACCTTAAATGTCCCCTCCATACTGTACTCAAACTAACACCAGTGGCCTACGGATGCAAAGTGGAATCTATTTACCTAAACATCCAAGCagtcaacacacacagaggaaaaccTGCGAACGTGGATGTGACAAGAAAGCCAGAAGAAGCACTTCGCACTGTTCCAGAACATTTCTAACACAGCTTATACAACACTTAGCTCCAGACAAGCGGCATTCCAAAAGTGGTCATACTCAGTATAACAGCtctggtacatttcactgtttgaatcattccgcttgtctgtgttcactacattaAACAATATACACTAAATTCCAATTCAAAGAATAATTCATTACATCAAAACCATCGAAATATGACACTTACTACAggctgtctgtcagtctgtgcaTTGCATTGCAACACACAGCACTCTATCCAACTGTGGCTTCTTTAAGAACTATTTTCGCTGAcggaggaaaaataaacaaaatatttggcgataa

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0006000 fructose metabolic process biological_process
GO:0006003 fructose 2,6-bisphosphate metabolic process biological_process
GO:0003873 6-phosphofructo-2-kinase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity molecular_function

KEGG:

id description
K19028 PFKFB1; 6-phosphofructo-2-kinase / fructose-2,6-biphosphatase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304485 lncRNA upstream 31700 19251445 ~ 19251797 (+) True G257242
TU304477 lncRNA upstream 37790 19243185 ~ 19245707 (+) True G257234
TU304475 lncRNA upstream 41929 19241112 ~ 19241568 (+) True G257232
TU304478 lncRNA upstream 48236 19233003 ~ 19235261 (+) True G257235
TU304470 lncRNA upstream 60992 19203336 ~ 19222505 (+) True pkig
XR_003403138.2 lncRNA downstream 52110 19346311 ~ 19350848 (+) True LOC113530341
TU304502 lncRNA downstream 60526 19354727 ~ 19359740 (+) True G257256
TU304499 lncRNA downstream 63310 19357511 ~ 19361051 (+) True G257255
TU304530 lncRNA downstream 99336 19393537 ~ 19393903 (+) True G257283
TU304535 lncRNA downstream 109295 19403496 ~ 19405521 (+) True G257287
XM_034311665.1 mRNA upstream 7744 19273287 ~ 19275753 (+) True si:dkey-78k11.9
XM_026920219.2 mRNA upstream 7744 19273287 ~ 19275753 (+) False si:dkey-78k11.9
XM_026920209.2 mRNA upstream 12275 19263417 ~ 19271222 (+) True ccn5
XM_034311674.1 mRNA upstream 60938 19198454 ~ 19222559 (+) False pkig
XM_034311673.1 mRNA upstream 61610 19198426 ~ 19221887 (+) False pkig
XM_026920185.2 mRNA downstream 1318 19295519 ~ 19309834 (+) True itih6
XM_026920186.2 mRNA downstream 7525 19301726 ~ 19309830 (+) False itih6
XM_034311659.1 mRNA downstream 28598 19322799 ~ 19331974 (+) True atp6ap1b
XM_034311885.1 mRNA downstream 145235 19439436 ~ 19465336 (+) True ptpn22
XM_026920204.2 mRNA downstream 331328 19625529 ~ 19633180 (+) False si:ch73-206d17.1
trnae-cuc_34 other upstream 250509 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 371783 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2162556 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2775117 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2887285 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 184101 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1096608 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1216043 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1608904 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1608946 20903147 ~ 20905073 (+) False ubxn10

Expression Profile