RNA id: TU304477


Basic Information

Item Value
RNA id TU304477
length 2523
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G257234
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19243185 ~ 19245707 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCATTATATTCTTGCCTAGGCAAAGATTATGTTACATACCAACcacagtggttaaaaaaaaaaaaaaaaaaaaaaagtctacccTACCCTCTGGCAGACAGTAATGTAATGGACACCACACTGTCCAGCTGCATATTAACCCTCAGTGCAGATGCtctctttacaaataaaatactttcaATACACTTACTgtgtttactttattaataatcTAAATGATCAATTTTGCTATGTTTCAGCTAAGGTAATACTTACGCAATGACATGCATGTACTGGTTAAACTTGCCCAAGAATTCGGTGAGTGTTCCCGGCTTATCCATTGAGCACAGGCTGGTCATCTCGGGCACTGTGGTTGCAGGGAGGGTAATACCTCGCCTCCTGAAACACAGTCAGAGGAAGATTAatgtgatcacacacactcccatgcAACAGTAAGTAATAATGTGCTAATTACTTTCACGGAGGTCTCATAACTTCTTTTCCTAACACCTCAGTGGTGTAAAACTAACTCCATGTGAATTTTCACTAGGCTccatgtgacattttatttactgtagctCAATAGATCAATAACACACCAATAAAACAGTGATCACCTACATCTACGTTCACACAGCTGTATCCATGGCCTACTAAAGTAATTCTAAGTTTAATCTTTTGTGTGTGGTTGTCTTTGGCAAATGATCAGTTATTctgaaaatacacaaataccAGACCATTCAGGTTTTGCCAGTAACAAAATCTGTGCCTGGTTAGCCCACACATTGGACACCTTTTACAGGAAGAGAATGGCTCACATCTGCTATTTGACTGTCAAATAGGACCAAAGTTCAGATTccaaaaaatggataaaatctAGAAGAACTCTTTAACATCTAAGCCTATAAAACTCCACAATCTGGTGAGTACTTGTTTTAAACTCTTTGTAAGGTTACAAAAGTGATTCCATCTCAATGAGATTCTGCTAAAATAAAGGTGAAATAAAGAACTGACTCTGCTGGATGATGGTATATAGATAATAGTAACCAACTCCAAcacctttgttgttgtcttggggttcagttgaacaTTCCAGACCAAAGTATGTTTATCCATGGGAGTTAATTTATGCCTCTTTCCTACAcgatacagtatgtgtgttaatatttgcatacaaatgtttgTACCGTTGCTTGTGGTcccttcagttgtttggaaattgctcctaaggaggaaccgaacttgtggaggtccacagTTCTTTTTCTGAGGTACTGGCTGAGTTGCTTGGttatcaagggcaaaaaggcactgGCCCTTAAATATAGCTAAATACAGTTAACTTttaattaactcctaattatgacaattggcTAATCAGAAGCATCTAAAAGTCATGAAGTCaccttggtgtatgtaaactttttatatagtgaattaaagctgaaatatatCTGTCCCTAATGGATTGTTTTAAGATGACCTCTGATATGAACAGAGAAGATGCCCTAATCAACTtgcaaaaagaaatgtatggtaacatgtatggagttgtggagaaactgaaattgaatatctttagcctttAAACGTTTGGCctgtataatgttgtggaacaagttttttctccctcacactcactcatcaATGACGCATAGAAGCAACATCTGAATTTAAGCTTTTTGGAGATACACACATTCCTGTTGTGTAGCCAGTTATGGATGAATAATCCAGTTTTCAAACTGCCACGTCTATCAGACAGCCAGCCGAAGATGTGAACAGTAGTAGCTGTAAGTGCAGTGGGCTTGTTTTATGGTTTCATTATCCTAGAAATTTGTGTTTTTGGgctgtttatttcagtttgaGCAATCATATCAATTTAACTAAAGTGATCTTTAACTAAATGTATCTTCCATTGTTgatgatatatataaaattatatcagCTGATATACTTTGGTTATTTATAATTGATAATGGACCATATCAGTTACTTATAATTATTTTTCCTAGCATTACATGCCCTTTTATCTTTGAATGTATTTCTTTAAAGTTATACATTGAGTTATAAAGCAATATTCAATTTAGTCAGATCGGGAGAAATCTTAtgataaataactttattatttagACTGAGGCCAATCTTAATTCCTGTCCATCAAATGATCTAGTTAAATGTGtccttgctttttttaaataaataaacataaattaaatttgCTCTTACTTGGCCACATCAAGTATGGTCTCGATCCTGATGGCACCATCAAGATGTACATGCAGTTCAACCTGTAGGTCAATAAGCATGACATATAATCCATTATACATAGTCTTATTACCCAATCTACCAAACAAAGACAAATTGAAGAATGTGGAGAAATAGTATGGTGTGTATGGAGATTTTGAGACAGATAACATTGTctatacagatacaaatacaaacagaaggtgcaatatatgttttttttttttcgaggcTATTTGATTGAGTCTACaagtgtgcatcaggactgggatcccgtgggatgcaaaaaaaaaaaagtca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304475 lncRNA upstream 1617 19241112 ~ 19241568 (+) True G257232
TU304478 lncRNA upstream 7924 19233003 ~ 19235261 (+) True G257235
TU304467 lncRNA upstream 20680 19198546 ~ 19222505 (+) False pkig
TU304470 lncRNA upstream 20680 19203336 ~ 19222505 (+) True pkig
TU304438 lncRNA upstream 124652 19117877 ~ 19118533 (+) True G257199
TU304485 lncRNA downstream 5738 19251445 ~ 19251797 (+) True G257242
TU304474 lncRNA downstream 14532 19260239 ~ 19311826 (+) True G257231
TU304489 lncRNA downstream 44213 19289920 ~ 19338836 (+) True G257245
XR_003403138.2 lncRNA downstream 100604 19346311 ~ 19350848 (+) True LOC113530341
TU304502 lncRNA downstream 109020 19354727 ~ 19359740 (+) True G257256
XM_034311674.1 mRNA upstream 20626 19198454 ~ 19222559 (+) False pkig
XM_034311673.1 mRNA upstream 21298 19198426 ~ 19221887 (+) False pkig
XM_026920210.2 mRNA upstream 48327 19190772 ~ 19194858 (+) False ttpal
XM_026920209.2 mRNA downstream 17710 19263417 ~ 19271222 (+) True ccn5
XM_034311665.1 mRNA downstream 27580 19273287 ~ 19275753 (+) True si:dkey-78k11.9
XM_026920219.2 mRNA downstream 27580 19273287 ~ 19275753 (+) False si:dkey-78k11.9
XM_034311658.1 mRNA downstream 37790 19283497 ~ 19294201 (+) True pfkfb1
XM_026920194.2 mRNA downstream 37790 19283497 ~ 19294201 (+) False pfkfb1
trnae-cuc_34 other upstream 210197 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 331471 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2122244 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2734805 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2846973 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 232595 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1145102 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1264537 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1657398 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1657440 20903147 ~ 20905073 (+) False ubxn10

Expression Profile