RNA id: TU304438


Basic Information

Item Value
RNA id TU304438
length 657
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G257199
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19117877 ~ 19118533 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGTTTTTTATTTCTGGAAAGACCAGATCTAcatacaaaacaataataaaaggtacaaaaaatgtattaaatatgacTTCAGATAATCTGTGTAGATACGGTATGTACAATAATTGCAAATATAGTGGAGACAAAACTAGAAACGGCTGCAAGTATCTAAATATAATACACTTACATAAAGAGAGGCGAATATCCTCTGGGGTTGATATAAAACAGGAGGATGCTATACTGCTGGTTCTATTTACAGGTCGAGTCGCCCTACACTGACCTCTCTATAGATAAATCATCCTGATCTGATTTGCCATGCTGCCGCTCGTCCCATCCTGCAGCAAAAATAACCATCAGAAAGTGTTTCTTGGCTATCCATGAGGAGCCTCGGCTGAACGAACCctcctaaaaaaagaaaaccagacTGAAGTCATAACTGCTGTAAATAAGACCTTTGCAGAAACAGGAGCCAAATGCAATTAGgctattttgtaataaaaatctTTCTGGCACATTTCCTCAGAAATGTTTTGTGAAATACAAATGTCTTGACATCAAAAATATAGtgttattttgtctgtttgttttcttagtTTACAAAAATTGAGATTGTCAGATTTAGCTTGCTTACTGTTTGAAAGCAAACAGCTGTTGGTCCCAAACTGCAGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304435 lncRNA upstream 51744 19065854 ~ 19066133 (+) True G257196
TU304354 lncRNA upstream 181035 18909837 ~ 18936842 (+) False G257127
TU304359 lncRNA upstream 181458 18891889 ~ 18936419 (+) True G257127
TU304358 lncRNA upstream 181458 18895857 ~ 18936419 (+) False G257127
TU304316 lncRNA upstream 271530 18841788 ~ 18846347 (+) False LOC113530356
TU304467 lncRNA downstream 80013 19198546 ~ 19222505 (+) False pkig
TU304470 lncRNA downstream 84803 19203336 ~ 19222505 (+) True pkig
TU304478 lncRNA downstream 114470 19233003 ~ 19235261 (+) True G257235
TU304475 lncRNA downstream 122579 19241112 ~ 19241568 (+) True G257232
TU304477 lncRNA downstream 124652 19243185 ~ 19245707 (+) True G257234
XM_034311662.1 mRNA upstream 314 19091010 ~ 19117563 (+) True rbms2b
XM_034311663.1 mRNA upstream 314 19091014 ~ 19117563 (+) False rbms2b
XM_034311661.1 mRNA upstream 314 19091017 ~ 19117563 (+) False rbms2b
XM_034311666.1 mRNA upstream 146629 18969994 ~ 18971248 (+) True LOC117599226
XM_026920462.2 mRNA upstream 183558 18879864 ~ 18934319 (+) True fmnl3
XM_026920224.2 mRNA downstream 42680 19161213 ~ 19165261 (+) True r3hdml
XM_026920201.2 mRNA downstream 48768 19167301 ~ 19187959 (+) False hnf4a
XM_026920199.2 mRNA downstream 63433 19181966 ~ 19187959 (+) False hnf4a
XM_026920202.2 mRNA downstream 63819 19182352 ~ 19187959 (+) True hnf4a
XM_026920210.2 mRNA downstream 72239 19190772 ~ 19194858 (+) False ttpal
trnae-cuc_34 other upstream 84889 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 206163 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 1996936 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2609497 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2721665 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 359769 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1272276 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1391711 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1784572 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1784614 20903147 ~ 20905073 (+) False ubxn10

Expression Profile