RNA id: XM_026920209.2


Basic Information

Item Value
RNA id XM_026920209.2
length 2589
RNA type mRNA
GC content 0.45
exon number 5
gene id ccn5
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19263417 ~ 19271222 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GAGCCAGCCAGTGAGCAAACAGCAGCACTAGTAGCTCAGCATACTTCGTTGGGACAGTGGGATGgacaaaaaagtgcaaaacacatacACTCTGCTGGCACGGGCACTACTGTTGTACCTGTGCTCCCAGGTATGCTGTCAAAAGTGTACCAGGCCATGCCAGTGTCACAGCTCTGTGCCAGCCTGCCCTGATGGCGTCGCTCTCGTCCTGGACGGATGTGGATGCTGCCAAGTGTGTGCTCGCCAGAAGGGTGAAGCCTGCACCGACATACTCGTGTGTGACAAGCAGCATGGCCTGGAATGTGACTACAGTGCCAGCTTCCCTGGAGATCCGGGagagtgtgtcaGTCAGGAAGAGCTGGGTTGTGAGCTGAATGGCATCTCTTATCAGGAGGGCGAGGTGTTCCAGCCATCCTGTAACACCCAGTGCAAATGTGCAGGTGGAGGAGTGACCTGCGTGCCCCTGTGCAGTTTAGATGTCCGTCTGCCCAGCTCAGACTGCCCATATCCTCAAAAGGTCCAGCTGCCAGGAAAGTGCTGTAAGGAGTGGGTGTGTGAGAACTTGGACAACAGTGTGCTACAGGATGCTCAAGCAGCTTACAGACATGCCCAAGTGTTGCCTGCACTTCCTGGTCACCAAGCCAGCCCCAGTTTAAACTGTATATATCAGAGCTCAGAGTGGAGTGCCTGCTCACGTACCTGTGGCCCAGGGATCTCCACACGCGTGAGCAACCAGAATGCAGCCTGCAGAATTGAGCAGCAGATCAGGCTGTGTAAAATCCGACCATGCCAGGCTTTGCCACATCAAACACCAGTGtgGCCAAGGAGATGCCAATCAAGCTACAGGTCAAATGTTCCTACACGCCTGCTCCATGAAGGCTGCTATAGCACACAATTTTACCGTCCACGTTACTGTGGCTTCTGCACTGATGGCCGATGTTGCACGCCTTATCGGGCCCACACCGTCCCAGTCACCTTCCGCTGCCCAGGGGGCCGCCTGCTCCGCCAAGCTGTCATGATGATCAGGTCCTGTGTTTGTCATTACAACTGCCCCTACTCGTCTGGCCGAACCTACAGGAGCCTTGCTCTGTGGGCATAGAGACTCTCATGCACTGATTCACACAAATCCCAGCTTGAAGCCTAGAAAGAATAGCACTTTGAACATACcacagtatatttttttattaccagGGATGGATTAGTAAATCCTGGACCCCTGGGCAGGAACTGTGCAGGTGCTATGCAGAAGAGAATCTTACTTTAGGCAACTggcttctttcttgcttttctaCTCGCAAACTCTTTCACCAAATCCACCAAATTCCAGCTCTTTAACAAGCTCCAACTCAATGGCCAGCAGTGACAGCATGTTGAGTCTTCTTTGGCCAATTTTAGTTTGGAGTTTGTTTTGAATCCAACCCAGTAGGCAAAATGAACATTCTTTggcttctttcttcttttcatcaACACACATAGTGTGAGTctactatgattttttttccatctgctTCTCTCGCCCTAACTGACCACTCACTGGATACAAATTCAGACCCACACACCAGTAatatttaagaatttatttcatattctgTGACTTTACGTTCATCGGCTTGGGTTCTGTTAACTCACTGCTGTGTGACGGTGTAATGGCTAATCAGACTAATCATTCAGTTCAAATCTATCCTTGTTGGAGACCTGCTAGTTGGCAGGGCCCCTGGACATCTGCCTAATAGACCCAGTCGCTGATCCATCCCTGTAAATTAGGTCATTTTGCATAAAGAGCTTGCTATCACACATACATTTCTGTAGGCCTTGCTCGAGAAGGTAGTGAACTGGCCTGATTCTTCACTTACAGCTTGTGTATATAgaattagtctttttttaatgtggtcGGAATTTCATAATTCAATGGATTTGAGAAGCAAAGAGAAGCCTGTTAAGATGTTTAACCCATCTCTTTTAGTTTATATGATGGCAGCTATTAGTCTTGAGTGCTTACAGCTTCTTATGTAATTTAATTATCGTAACTTGTACACTTACTGTCACTTAGTGTTGAATACttttgaatgtttaaaaatgaagtaGCACTGTAAGTGTAGACTGACATTTCCAATGTTTCTTCCAAGCTTTGATCTGGATCCCTATTTTAGATATTTCATCTCCTACAGACAGCTTTTCCTCCATAaattttaacaaatgtttaatttttaaatttatgtgtTTGGAATGAGATACTTTTCTTCTTTAAGTATTGTAATATTATATCACTAATCCCTACACAGAACAAGGTTATCTTAAATTGGTTTCCTGtatctttccattttctctatCAGTTGTTGTTATCCCTACTAGGCCAGTGAAGATATAAATCCCATTTCAGAGAAGTTTATGTCCAGGCAGCCACTTGAATAAGGACTTGGGTGAAATATTGTATAACCTCTTTTAAAGAGACACCAACTGTTGTGTTGCGAGACCCATTATTTTGCTCATGTAATTTGctgtacatatttgtaaatgcatttattacattatatatatattggtttATAATTTATGTGTCCTCACAACATTATAGATTTCATGTCTGAA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0001558 regulation of cell growth biological_process
GO:0005576 extracellular region cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005520 insulin-like growth factor binding molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304485 lncRNA upstream 11620 19251445 ~ 19251797 (+) True G257242
TU304477 lncRNA upstream 17710 19243185 ~ 19245707 (+) True G257234
TU304475 lncRNA upstream 21849 19241112 ~ 19241568 (+) True G257232
TU304478 lncRNA upstream 28156 19233003 ~ 19235261 (+) True G257235
TU304467 lncRNA upstream 40912 19198546 ~ 19222505 (+) False pkig
TU304489 lncRNA downstream 18698 19289920 ~ 19338836 (+) True G257245
XR_003403138.2 lncRNA downstream 75089 19346311 ~ 19350848 (+) True LOC113530341
TU304502 lncRNA downstream 83505 19354727 ~ 19359740 (+) True G257256
TU304499 lncRNA downstream 86289 19357511 ~ 19361051 (+) True G257255
TU304530 lncRNA downstream 122315 19393537 ~ 19393903 (+) True G257283
XM_034311674.1 mRNA upstream 40858 19198454 ~ 19222559 (+) False pkig
XM_034311673.1 mRNA upstream 41530 19198426 ~ 19221887 (+) False pkig
XM_026920210.2 mRNA upstream 68559 19190772 ~ 19194858 (+) False ttpal
XM_026920212.2 mRNA upstream 68559 19190885 ~ 19194858 (+) False ttpal
XM_026920211.2 mRNA upstream 68559 19191232 ~ 19194858 (+) True ttpal
XM_034311665.1 mRNA downstream 2065 19273287 ~ 19275753 (+) True si:dkey-78k11.9
XM_026920219.2 mRNA downstream 2065 19273287 ~ 19275753 (+) False si:dkey-78k11.9
XM_034311658.1 mRNA downstream 12275 19283497 ~ 19294201 (+) True pfkfb1
XM_026920194.2 mRNA downstream 12275 19283497 ~ 19294201 (+) False pfkfb1
XM_034311657.1 mRNA downstream 12275 19283497 ~ 19294201 (+) False pfkfb1
trnae-cuc_34 other upstream 230429 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 351703 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2142476 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2755037 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2867205 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 207080 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1119587 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1239022 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1631883 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1631925 20903147 ~ 20905073 (+) False ubxn10

Expression Profile