RNA id: XM_034311659.1


Basic Information

Item Value
RNA id XM_034311659.1
length 2135
RNA type mRNA
GC content 0.47
exon number 10
gene id atp6ap1b
representative True

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19322799 ~ 19331974 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCACGTGACCTGCTGTGAGGATGGCGGAAGTTAGTAGTCGGTCTGGATGTGCCTCAGCAATGGCGAAGtttgcagttttatttgtattttctttattatgtACTTGCAGGGCACAAGTGCCTTTAATCATGTGGACCAGTGATGgGTACACTTTCCCAACCCTGGTTGAACCAACAGCTGGTGAGATTGTCTCCGGTGCGAAGTTGGCATCCTATCTGAAATCAGCCTTGACAACTTCTCCACACAACGTGCTGCTGTTTTTACAGGACGAGTTAAGCATGGATGATTTCACAGCATACGGTGGGGTGTACGGCAACAAGGAAGACAGCGTCTTTGTAAACTTGGAGTCTGCATTGCAGGCGTCCACTCCCATGGTGCTGCCAGCTCTGGCCTGGACTGCAGCCGACTCCGTGGAGGAAATCTTCCAGCAGGAGCTCGGAGTTCCTGCACTCACCATTGCACCGTCAGAACTCGGCCAGCTTCAGCTGAACACAGCACAGCCTTCTCTACTGGTCATCAGGCTCCCATACACCACTGGTGCCCAAGCAAAAGAGCTTCTTAGGAAAAATGATGAGACCATTGGATATGTCCTGACTACACTGCGAGCTCAGAGTGTGCCTTATACCGCTGTTTACACCGGCCTGAGACCTTCTCATGTGATTCAGGACACGTCCATGGCTTGGGAATTAGCGGGACGCTCGCTGCTGCAGACATCAGCAGAACCAGCCGTCAAACCTCCAGTGACTTTCAACAGCACCGAAGGAAAGCCTTGTATTCTGCTCTGGGCTGATGAACTAAACATCAGCTATGACAAGGGAAAGTTTTTTGATTTGGGCTCTCTTACGTTCAATGGCTCGGTCTCTCTGGATGGTTCTTTCTGTAATGAAACCTTTTCCAGTCTTGTCCTGAATTATGAAAATGTTCTGAATTTCCGCTCCTTCCAGCTTATCTTCTTGATGCGCAAGATCTTCTTCCCTGTGTCGGCTCGTAACTGGACGGTCATGGAGCAGGTGGAGCTGAACTATGACGGCCAGAAGGCCATCTTCAACGCCAGCCATGGAATCTATGCTCCTGCTGAGTATTCCTTCCACTGTCAGAAAGTGAGCAGTGCTCAGAGCCCCCTACTGGTGCCACGCAACACGAAGGACAACGCCACCCTCTGGAGTGTCCTCTTCACTGACTTCCAGATCCAGGGCTTCAACGTGACTGGGAATTTCTCGTACGCCAGCGACTGTGCCAGCTTCTTCACACCGGGAATCTGGATGGGGCTGCTCACTTCTCTGCTCATGGTTTTCATCCTCACCTACGGCCTGCACATGATTATGCAGCTGCGCACTATGGACCGCTTTGACGATCCTAAAGGCCCTAGCATTTCTGTGCCTCAGAACGAGTAATTCGAAGCGAAGCCAAAGCCAAACGCCTTcaggtttcatttttattctgtttgtgCTGACCTAGATTAGAAACCTGTTTTCGTCCCAGAGGTTCCACGTTGTAGAGATCGCGCACTATGCAAGGTGTTTATCCTGTCGTCAGCACTACAACCTTGTGCTGTTTCAGGTACAGAAACAGTTTACGGTTTTGCTGACACTTTTCAACATTTGTGCAACATTTGTTTCACAGATATGCAATTTCCCTTCTGATGTAATATTTCCTGAAGCAACAGTGCTTCTCATTATGTATTGTTTGCAccactagcacacacacacacagacacacacaaaaaaaatactggttGCCATCCTGATATTGAATGTCTTATACAATGCTAAACCTGCTACGTGTATTTGATACAGATGTAGTACTTGCCAAAATGTCATATGCCAAATGTACTACTGAAGTGTCCTTGAACAGTTTtatccttctttttttaatatatactaCTGAAGTGTCTTTTAATaccaaagcaaaacaaaagtgTGGGGTTTAGTCATTAATATCTGTGAACAACTGTGCTGTAGTGCTAATTCTTCCCTAAATCTCTCACCGTCTCACCAAACATCCCTGAGTTATGGCTGGCCATGTGACAACAATacgtgaggaataaaacaagttggcggtgtgctgttacaggaaaataaaacaatgacaaGGCGGTGGGATgcattaccaccccaaagttgattattttcat

Function

GO:

id name namespace
GO:0003406 retinal pigment epithelium development biological_process
GO:0032438 melanosome organization biological_process
GO:0008057 eye pigment granule organization biological_process
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K03662 ATPeVS1, ATP6S1; V-type H+-transporting ATPase S1 subunit

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304474 lncRNA upstream 10973 19260239 ~ 19311826 (+) True G257231
TU304485 lncRNA upstream 71002 19251445 ~ 19251797 (+) True G257242
TU304477 lncRNA upstream 77092 19243185 ~ 19245707 (+) True G257234
TU304475 lncRNA upstream 81231 19241112 ~ 19241568 (+) True G257232
TU304478 lncRNA upstream 87538 19233003 ~ 19235261 (+) True G257235
XR_003403138.2 lncRNA downstream 14337 19346311 ~ 19350848 (+) True LOC113530341
TU304502 lncRNA downstream 22753 19354727 ~ 19359740 (+) True G257256
TU304499 lncRNA downstream 25537 19357511 ~ 19361051 (+) True G257255
TU304530 lncRNA downstream 61563 19393537 ~ 19393903 (+) True G257283
TU304535 lncRNA downstream 71522 19403496 ~ 19405521 (+) True G257287
XM_026920185.2 mRNA upstream 12965 19295519 ~ 19309834 (+) True itih6
XM_026920186.2 mRNA upstream 12969 19301726 ~ 19309830 (+) False itih6
XM_034311658.1 mRNA upstream 28598 19283497 ~ 19294201 (+) True pfkfb1
XM_034311885.1 mRNA downstream 107462 19439436 ~ 19465336 (+) True ptpn22
XM_026920204.2 mRNA downstream 293555 19625529 ~ 19633180 (+) False si:ch73-206d17.1
XM_026920800.2 mRNA downstream 452597 19784571 ~ 19794997 (+) True zgc:158263
XM_034311905.1 mRNA downstream 507737 19839711 ~ 19848662 (+) False zbtb48
XM_026920864.2 mRNA downstream 508879 19840853 ~ 19848661 (+) True zbtb48
trnae-cuc_34 other upstream 289811 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 411085 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2201858 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 2814419 16508025 ~ 16508380 (+) True G256046
TU302910 other upstream 2926587 16373242 ~ 16396212 (+) False LOC113530371
TU304946 other downstream 146328 19478302 ~ 19478895 (+) True G257622
TU305571 other downstream 1058835 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 1178270 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1571131 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1571173 20903147 ~ 20905073 (+) False ubxn10

Expression Profile