RNA id: XM_026920204.2


Basic Information

Item Value
RNA id XM_026920204.2
length 2071
RNA type mRNA
GC content 0.43
exon number 10
gene id si:ch73-206d17.1
representative False

Chromosome Information

Item Value
chromosome id NC_047610.1
NCBI id CM018556.1
chromosome length 25111544
location 19625529 ~ 19705063 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCTTCATGGTCAGTGCTCtcaatgtcaaaaaaaaattcagcattcCGCTCTGGCAGGGACACTTGTTTCTTTGTTCACTTGTCAACTTGTGAAAATGAAGGACAGCTTTTCTTTCAAGGCCAAGGATATGAGCAAGTCATAAGAGATGCTTCAGATAAACCACCAATGGATGTGCAGGTTACATGCAACGTCTCCAGCCTTGAATGTGGTCAATTAGCACTCATCATCATTCCCAGTCTCCTGGTTCTTAGCACACTGACTATCGTATCTCGGATAATATGGAGcttcttaaaaaagaaatcagttcTGAGGTCCTCGGCAGCGTCTTTCGATCGAAATGGTCTTCTGCCTGGACACAAAGCTCTGAGCTCATGGGAAATGCCCGCCCACTGCATCCTGGAAGGGGTGGAGTTCCTGAAAAATGGCCGATATGGGGCTACCTGCAAGGGCCAGTTGAAACGAGATGGAGTTGCCACTGCTGTGGTAATTAAAATGTTCAGAGGAAGTTCAAACAGTCAGGAGGCAAAAGTGTTTGTGGAGTTGGCCTTGTTCTACTCAACAGTTTGCAAACACGACAATCTGGTGCGCATGCTGTACTGCCAGACACAACGATCTCCCATGTACATGGTTTTCGAGATGAGCACTCCTGGAAATCTGCTACATTTCTTATGGAGCCTTCGAGAGGGTGGACATGGGAAGTGCCATCAAGAACAGTCTTTTTCAGAGAGATCTGTGTATTTAGTGGCCAAACAAGTGGCAACCGGTCTGGACTACCTGCTGTCAGAGCACAGGCTTGTGCACGGGAACGTCGCGGCACGCAGCATGCTGATTGGCTCCGGGCTTCTGGTGAAAGTGTCCGGATTGGACTCGGCTTTCGAGTCGAGGCAGATGGAGACGGAGACAGTGGGAAAGAAAGGGACAGAAGGAGTGCCTCTGAAGTGGCAGGCACCAGAGAGACTACTCAGACTTCCTGTTACAGCCAGGAGTGATGTGTGGTCCTTTGGAGTGCTCCTCTATGAGTTGATAACTTTAGGTGCTCCTCCATTTCCTGAACTGGAGCCATCGGAGACGTTCCTCCAGACATTGGCCAATTACAAGCTAAAAAGACCTCCAAACTGTGGAGGGGCACTGTTTGACCTCATGAAATATTGCTGCATGTGGAATTTTAAGGATCGCCCGGCTTATTCTGCTATCATCAAACTGCTGGAGTCGTACATCCACCTGGCTGATGCTAAACCCCTCAGTGCAACACAACACATGGACATTTCTGAATACAGAACGAAGGCAGGAGTTCCACCTTGAGTTTTCAGTGCGTACATAAGGCCGTATTCAGAACTGGCAACTTAAGTCCAAAtgtaaagtcaatatttaaatgGGGAAAGTTGTTTGTAGCTGTTCAGAGACTGGTTATGCAGTTGCTCAAGTCAATTTTCTGGCCTCCAAACATCTGAGATGGGTTTTCAACCACATCTATACTACTACCTTTAAATACAAGCGCCTGCCTTTACAcctgataaaaaaatatatgactgAAGAGCAAgagtcaaatgtaatatgatgtaacataaaagcaagggACAATATCTAATAAGAACCCAGTATATtgccaaaaaattttttttgcatgaattGTCCTAGTTTAGAAAATTTGGTttcaatatggcttccaccctcattattcgGCAgcttatagaatagcacttgatccagcacatgctattattttgctttgttttttaaatcatgggTTGACTAAATCGAGGTCATAAAATCAATGTGTATGTGGAGCAGGCTATTTTTATCATGCCTTTATGTTCGTTTGTGTAATTACTAATATAATGTcaatattttgtaaattcagtgcactctcctgtaaagaaaacgtgcACAAGATTTGAAAAATAAGTTGACTGAGCTCTCTTCTGCTATGCTTGcagtattatttataattttattgataAAAATTTGGTCTTCAAGATAAACATTGTCTTGAATTAAGATGCTGTGATGTCTttggtgtgaaaaaacaaacCTTCTTGTGCACTATAAAAGgatgatattatttattaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU304947 lncRNA upstream 143954 19481110 ~ 19481575 (+) True G257623
TU304932 lncRNA upstream 154611 19466692 ~ 19470918 (+) True G257608
TU304933 lncRNA upstream 159302 19465730 ~ 19466227 (+) True G257609
TU304535 lncRNA upstream 220008 19403496 ~ 19405521 (+) True G257287
TU304530 lncRNA upstream 231626 19393537 ~ 19393903 (+) True G257283
TU305000 lncRNA downstream 27458 19660638 ~ 19666585 (+) True G257671
TU305050 lncRNA downstream 100171 19733351 ~ 19735213 (+) True G257710
TU305053 lncRNA downstream 110305 19743485 ~ 19745946 (+) True G257713
TU305143 lncRNA downstream 374772 20007952 ~ 20008154 (+) True G257781
TU305133 lncRNA downstream 375459 20008639 ~ 20010104 (+) True G257774
XM_034311885.1 mRNA upstream 160193 19439436 ~ 19465336 (+) True ptpn22
XM_034311659.1 mRNA upstream 293555 19322799 ~ 19331974 (+) True atp6ap1b
XM_026920185.2 mRNA upstream 315695 19295519 ~ 19309834 (+) True itih6
XM_026920186.2 mRNA upstream 315699 19301726 ~ 19309830 (+) False itih6
XM_026920197.2 mRNA upstream 331328 19286212 ~ 19294201 (+) False pfkfb1
XM_026920800.2 mRNA downstream 151391 19784571 ~ 19794997 (+) True zgc:158263
XM_034311905.1 mRNA downstream 206531 19839711 ~ 19848662 (+) False zbtb48
XM_026920864.2 mRNA downstream 207673 19840853 ~ 19848661 (+) True zbtb48
XM_026920865.2 mRNA downstream 207673 19840853 ~ 19848661 (+) False zbtb48
XM_034311906.1 mRNA downstream 208515 19841695 ~ 19848661 (+) False zbtb48
TU304946 other upstream 146634 19478302 ~ 19478895 (+) True G257622
trnae-cuc_34 other upstream 592541 19032917 ~ 19032988 (+) True trnae-cuc_34
TU304341 other upstream 713815 18879568 ~ 18911714 (+) False fmnl3
XR_004579712.1 other upstream 2504588 17071136 ~ 17120941 (+) False itga5
TU303060 other upstream 3117149 16508025 ~ 16508380 (+) True G256046
TU305571 other downstream 757629 20390809 ~ 20398714 (+) True G258096
XR_003403172.2 other downstream 877064 20510244 ~ 20514195 (+) False LOC113530729
XR_004579743.1 other downstream 1269925 20903105 ~ 20907250 (+) False ubxn10
TU305940 other downstream 1269967 20903147 ~ 20905073 (+) False ubxn10
TU306101 other downstream 1595140 21228320 ~ 21230871 (+) False si:ch73-290k24.5

Expression Profile