RNA id: TCONS_00044733


Basic Information

Item Value
RNA id TCONS_00044733
length 294
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_022332
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 22139777 ~ 22151790 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atgcttgttaaataatattttgttcaATAATACTCATCAAATAAATTCAATatcaatataattaatattatatttatctcCTTGGTCTTTCTGTAGAACCATATATTCAGCTAAAGatcttctttaatattctactgacaaaaaaagtcacctacatcttggataacctgaggAGCACTTCAGCACACTCAACACAGATGGGAAGGGAAACCCTGCCCAAATCAGCCCCTTTGCCTACTTGAAAACGCCACAACTACACATGAGGTAAAGTGGATGCTTTTTATATGCTAAATA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045000 lncRNA downstream 444716 21654274 ~ 21695061 (-) True XLOC_022325
TCONS_00044064 lncRNA downstream 447354 21683776 ~ 21692423 (-) True XLOC_022326
TCONS_00044999 lncRNA downstream 489902 21646702 ~ 21649875 (-) True XLOC_022324
TCONS_00044998 lncRNA downstream 1131823 21004206 ~ 21007954 (-) True XLOC_022316
TCONS_00044997 lncRNA downstream 1201199 20858313 ~ 20938578 (-) True XLOC_022315
TCONS_00045001 lncRNA upstream 60335 22212125 ~ 22216128 (-) True XLOC_022333
TCONS_00045002 lncRNA upstream 406772 22558562 ~ 22591687 (-) False XLOC_022335
TCONS_00045003 lncRNA upstream 438911 22590701 ~ 22591803 (-) True XLOC_022335
TCONS_00045004 lncRNA upstream 860498 23012288 ~ 23023994 (-) False XLOC_022339
TCONS_00045005 lncRNA upstream 860498 23012288 ~ 23023995 (-) True XLOC_022339
TCONS_00044075 mRNA downstream 8999 22063496 ~ 22130778 (-) False XLOC_022331
TCONS_00044074 mRNA downstream 26322 22063484 ~ 22113455 (-) False XLOC_022331
TCONS_00044073 mRNA downstream 67061 22063484 ~ 22072716 (-) False XLOC_022331
TCONS_00044076 mRNA downstream 67317 22067828 ~ 22072460 (-) True XLOC_022331
TCONS_00044072 mRNA downstream 182394 21955056 ~ 21957383 (-) True XLOC_022330
TCONS_00044077 mRNA upstream 344524 22496314 ~ 22523303 (-) True XLOC_022334
TCONS_00044078 mRNA upstream 426692 22578482 ~ 22623115 (-) True XLOC_022336
TCONS_00044079 mRNA upstream 438833 22590623 ~ 22598002 (-) False XLOC_022335
TCONS_00044080 mRNA upstream 482652 22634442 ~ 22650992 (-) False XLOC_022337
TCONS_00044081 mRNA upstream 483143 22634933 ~ 22650668 (-) False XLOC_022337
TCONS_00044058 other downstream 625431 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044044 other downstream 1801180 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044043 other downstream 1811155 20325698 ~ 20328622 (-) False XLOC_022305
TCONS_00044031 other downstream 2013566 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044082 other upstream 491614 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044083 other upstream 491874 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044084 other upstream 711667 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044095 other upstream 1996548 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044112 other upstream 2291392 24443182 ~ 24444254 (-) False XLOC_022355

Expression Profile

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