XLOC_022335


Basic Information

Item Value
gene id XLOC_022335
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 22558562 ~ 22598002 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045002
agcgcttttacaatgcaaattgtgTTAAAGaaacttaacatagaagttctagtaaattgaagaggtgtcagtccagttttcagagttcagtttagttcagttaattTTGCTCCATTAGCAGCTTCATAACAAACACATCCCGTCATAAGCTGAATATGTCATCAGACCATAAGCTAAGTATAAACAGGTCACGCCATGTCATGACAGTGCTGCGAAACTGCGAAATCTGGTCAGCTGATATTCACAATAACACTTGACTGAATCACTCCTGCTTTCATTGTAGATAAAAAACAATCTATGAGAAAAAAAGAGCAAACCTACAGTAAGCATGAATCAATTTCAACACTAATGAAATGACTCAGGCTACATTTTGTAACAGCAAAGACGAAACAAAAGCAGACACTCACGATTAGAAGAATGAATGAGACGGGAAGCTTGATAACATGCACAGACTCTAGATCTGTCTTTTCTCATCTCTCTCCAGGCTCTGAATGCTCGAGCGGGGTTgactggatggatgaatgggctTTTAAAGGTGACGAGTTTCTGCGGCAGTATACTTGCTGATTGCTTCGTTCTCACTCCACACAACAACCAGCTAAGACACTGCCAGAGAACCACTCACAGCAGCGGCCCGAACCCCTCGCTCGCTTCAGCATCTCCTGCATCTTCTGGAAAGTCTCCCTGTTTTAACGACTGTCCCGTCTTCTGCAGGACACAAGTGGAGTAGCGGCTCGT
>TCONS_00044079
AAAAATCTGGCAAACTCCATAGAAGTACGACAGCGCGGAGAGAAGGCGAAGAAAACAAAAGGTGGAGAAGAGAAAATGAAAAATCAATGCTTGATCCTGCATTAGAGGCAACCCGTAGTTCTCCTTTCATCACTTCGGCTCTGAATGCTCGAGCGGGGTTgactggatggatgaatgggctTTTAAAGGTGACGAGTTTCTGCGGCAGTATACTTGCTGATTGCTTCGTTCTCACTCCACACAACAACCAGCTAAGACACTGCCAGAGAACCACTCACAGCAGCGGCCCGAACCCCTCGCTCGCTTCAGCATCTCCTGCATCTTCTGGAAAGTCTCCCTGTTTTAACGACTGTCCCGTCTTCTGCAGATGACGGTATAGGTGAGGCgtctgctgaaaacacacacagagaagagaaaaaaaacaaactcatACTTCCAGTTTATGACATCTCACTGCTCCCTGCACTGCAAATGAAAACATGTGTGACGTAATGTAGGGAATTACAGCAGTCACAagtccatttttttttctatcaggATTTTTTGTTGTTTAGTTAGAAGTAAATAGAAATATCCTGTCAAAATGATTTAGA
>TCONS_00045003
CAAAATTATTCtttatatgttttacattttatacatattttttacttTGTAAATACGTTATAATGTTTTGATTCATCATTGTAATCTTCAattgtaatgttattttttatttctatagcgcttttacaatgcaaattgtgTTAAAGaaacttaacatagaagttctagtaaattgaagaggtgtcagtccagttttcagagttcagtttagttcagttaattTTGCTCCATTAGCAGCTTCATAACAAACACATCCCGTCATAAGCTGAATATGTCATCAGACCATAAGCTAAGTATAAACAGGTCACGCCATGTCATGACAGTGCTGCGAAACTGCGAAATCTGGTCAGCTGATATTCACAATAACACTTGACTGAATCACTCCTGCTTTCATTGTAGATAAAAAACAATCTATGAGAAAAAAAGAGCAAACCTACAGTAAGCATGAATCAATTTCAACACTAATGAAATGACTCAGGCTACATTTTGTAACAGCAAAGACGAAACAAAAGCAGACACTCACGATTAGAAGAATGAATGAGACGGGAAGCTTGATAACATGCACAGACTCTAGATCTGTCTTTTCTCATCTCTCTCCAGGCTCTGAATGCTCGAGCGGGGTTgactggatggatgaatgggctTTTAAAGGTGACGAGTTTCTGCGGCAGTATACTTGCTGATTGCTTCGTTCTCACTCCACACAACAACCAGCTAAGACACTGCCAGAGAACCACTCACAGCAGCGGCCCGAACCCCTCGCTCGCTTCAGCATCTCCTGCATCTTCTGGAAAGTCTCCCTGTTTTAACGACTGTCCCGTCTTCTGCAGATGACGGTATAGGTGAGGCgtctgctgaaaacacacacagagaagagaaaaaaaacaaactcatACTTCCAGTTTATGACATCTCACTGCTCCCTGCACTGCAAATGAAAACATGTGTGACGTAATGTAGGGAATTACAGCAGTCACA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000093376

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045002 False 738 lncRNA 0.43 2 22558562 22591687
TCONS_00044079 False 593 mRNA 0.44 4 22590623 22598002
TCONS_00045003 True 978 lncRNA 0.39 2 22590701 22591803

Neighbor

gene id symbol gene type direction distance location
XLOC_022334 spsb1 coding downstream 35259 22496314 ~ 22523303 (-)
XLOC_022333 NA coding downstream 342434 22212125 ~ 22216128 (-)
XLOC_022332 NA coding downstream 406772 22139777 ~ 22151790 (-)
XLOC_022331 phc2a coding downstream 427784 22063484 ~ 22130778 (-)
XLOC_022330 si:dkey-68l7.2 coding downstream 601179 21955056 ~ 21957383 (-)
XLOC_022337 ca6 coding upstream 36440 22634442 ~ 22650992 (-)
XLOC_022338 AL954857.1 coding upstream 265455 22863457 ~ 22863571 (-)
XLOC_022339 NA coding upstream 414286 23012288 ~ 23023995 (-)
XLOC_022340 noc2l coding upstream 528128 23126130 ~ 23179417 (-)
XLOC_022341 NA coding upstream 595874 23193876 ~ 23253795 (-)
XLOC_022325 NA non-coding downstream 863501 21654274 ~ 21695061 (-)
XLOC_022326 CR548634.1 non-coding downstream 866139 21683776 ~ 21692423 (-)
XLOC_022324 NA non-coding downstream 908687 21646702 ~ 21649875 (-)
XLOC_022343 NA non-coding upstream 781463 23379465 ~ 23449083 (-)
XLOC_022345 NA non-coding upstream 1459408 24057410 ~ 24115957 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G161352 NA non-coding CI01000030 null 6114451 ~ 6118974 (-)
rainbow trout (Oncorhynchus mykiss) G839149 NA non-coding NC_048573.1 CM023227.2 72503324 ~ 72504460 (-)
tiger barb (Puntius tetrazona) G123974 NA non-coding NC_056716.1 CM032085.1 3159424 ~ 3196123 (+)
mexican tetra (Astyanax mexicanus) LOC103039899 NA non-coding NC_035911.1 CM008314.1 27627415 ~ 27649689 (+)