RNA id: TCONS_00045002


Basic Information

Item Value
RNA id TCONS_00045002
length 738
lncRNA type read_through
GC content 0.43
exon number 2
gene id XLOC_022335
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 22558562 ~ 22598002 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

agcgcttttacaatgcaaattgtgTTAAAGaaacttaacatagaagttctagtaaattgaagaggtgtcagtccagttttcagagttcagtttagttcagttaattTTGCTCCATTAGCAGCTTCATAACAAACACATCCCGTCATAAGCTGAATATGTCATCAGACCATAAGCTAAGTATAAACAGGTCACGCCATGTCATGACAGTGCTGCGAAACTGCGAAATCTGGTCAGCTGATATTCACAATAACACTTGACTGAATCACTCCTGCTTTCATTGTAGATAAAAAACAATCTATGAGAAAAAAAGAGCAAACCTACAGTAAGCATGAATCAATTTCAACACTAATGAAATGACTCAGGCTACATTTTGTAACAGCAAAGACGAAACAAAAGCAGACACTCACGATTAGAAGAATGAATGAGACGGGAAGCTTGATAACATGCACAGACTCTAGATCTGTCTTTTCTCATCTCTCTCCAGGCTCTGAATGCTCGAGCGGGGTTgactggatggatgaatgggctTTTAAAGGTGACGAGTTTCTGCGGCAGTATACTTGCTGATTGCTTCGTTCTCACTCCACACAACAACCAGCTAAGACACTGCCAGAGAACCACTCACAGCAGCGGCCCGAACCCCTCGCTCGCTTCAGCATCTCCTGCATCTTCTGGAAAGTCTCCCTGTTTTAACGACTGTCCCGTCTTCTGCAGGACACAAGTGGAGTAGCGGCTCGT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045001 lncRNA downstream 342434 22212125 ~ 22216128 (-) True XLOC_022333
TCONS_00044733 lncRNA downstream 406772 22139777 ~ 22151790 (-) True XLOC_022332
TCONS_00045000 lncRNA downstream 863501 21654274 ~ 21695061 (-) True XLOC_022325
TCONS_00044064 lncRNA downstream 866139 21683776 ~ 21692423 (-) True XLOC_022326
TCONS_00044999 lncRNA downstream 908687 21646702 ~ 21649875 (-) True XLOC_022324
TCONS_00045004 lncRNA upstream 420601 23012288 ~ 23023994 (-) False XLOC_022339
TCONS_00045005 lncRNA upstream 420601 23012288 ~ 23023995 (-) True XLOC_022339
TCONS_00045006 lncRNA upstream 602189 23193876 ~ 23253795 (-) True XLOC_022341
TCONS_00045007 lncRNA upstream 787778 23379465 ~ 23387225 (-) False XLOC_022343
TCONS_00044090 lncRNA upstream 787778 23379465 ~ 23449057 (-) False XLOC_022343
TCONS_00044077 mRNA downstream 35259 22496314 ~ 22523303 (-) True XLOC_022334
TCONS_00044075 mRNA downstream 427784 22063496 ~ 22130778 (-) False XLOC_022331
TCONS_00044074 mRNA downstream 445107 22063484 ~ 22113455 (-) False XLOC_022331
TCONS_00044073 mRNA downstream 485846 22063484 ~ 22072716 (-) False XLOC_022331
TCONS_00044076 mRNA downstream 486102 22067828 ~ 22072460 (-) True XLOC_022331
TCONS_00044080 mRNA upstream 42755 22634442 ~ 22650992 (-) False XLOC_022337
TCONS_00044081 mRNA upstream 43246 22634933 ~ 22650668 (-) False XLOC_022337
TCONS_00044086 mRNA upstream 534443 23126130 ~ 23179417 (-) False XLOC_022340
TCONS_00044085 mRNA upstream 534443 23126130 ~ 23179417 (-) False XLOC_022340
TCONS_00044087 mRNA upstream 535603 23127290 ~ 23160088 (-) True XLOC_022340
TCONS_00044058 other downstream 1044216 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044044 other downstream 2219965 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044043 other downstream 2229940 20325698 ~ 20328622 (-) False XLOC_022305
TCONS_00044031 other downstream 2432351 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044082 other upstream 51717 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044083 other upstream 51977 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044084 other upstream 271770 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044095 other upstream 1556651 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044112 other upstream 1851495 24443182 ~ 24444254 (-) False XLOC_022355

Expression Profile

//