RNA id: TCONS_00045004


Basic Information

Item Value
RNA id TCONS_00045004
length 4121
lncRNA type antisense_over
GC content 0.41
exon number 2
gene id XLOC_022339
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 23012288 ~ 23023995 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCCAGATTAACCGTTAGAGGCGGCAACAGACGCGCTCAGTTCAGATAAAAGAACACAGCACCTGTGTGGACAAATACTGCAAGCAGCCAACCACTAGCCAGCATgGTCGACACTTAAAGTCTCTCTGTCGGATGTAGAAAACCCCCTTACAGTCGTCCCCGCCTCCGCGCCGTTGTTGGCAGCGGCCCCGGAGCCACAGCGCTGCCGGCGGGGGAGAGAGGTAATAAATAACCCGGGGAGAGGAGCGGAGACCGCCGGGCGGTGCACAGTCTGACCTGACAAATACTCACTGGAAAACCATCAGAGAGCAAAAGCCCACCCCTAATGCTTGGAGCCAGCCTTTCAGACATGAGCAGAAAAATACAGAAGCCTGCCCATATCGGAAAAAACACTGTCTCTCTCTCCCCATCATCAGCATTAATACAGTGAAAAATGCTGCAAGAGTAATTGAAGGTATAGTCATCAATGCAACTCCCATTAAAAAGTTTTTCAAGTAAACAACTAAACAGcactttttttacactttttttttagtttacaagAGATGAAGAATAGAATGCAGTCAACACATTCTAGAGAATAGAATGTCTAGATACTGCATGATACCGTGCTCATATCACATGACCAGCAGTGGCGCGCTATTGGCTGAGCTAATAAACATAATTAGAAGAATTTTAAAGTTACTatcttttgtgttgttgttgttgttgttcaattTAAAAATCTCTAACCAGCGCAGACCCGAGTGAGTGCTCCGACTTCAATTCACatgtagcgcatgtttttggactgtgggggaaacaggagcacccggaggaaacccacgtgaccaTGGGGAGAaaattcaaactccacacagcaaacTGCAAACTGACTCATCcagggctcgaatcagtgaccttcttcttacttggatgatgcgacggcagccacaggacaacggcgccagtatGTTCACCACACAGCaattggtggagtggagaaacAGTGATAAAGCcagttcagtggatggggatgattgaagGTCAGTCATGGCCCTTTTGGCCAGGAACCCAGGGTCACACCTCTCCTCTTTAAGAGAAGTagcatgggatttttaatgaccacagtgagtcaggaccttggtttaaagtctcatctgaaagacagcgctcactgacagtgtcctcttcactttaccggggcattaggactcacacagactgcaggttgagcgccccatgttggcctcactaacaccacttccaacagaaaCCTAGTTTCCCATgttgtctcccatccaggtactgaccaggctcagccctgcttgacTTCAGTgggtaaccagtcttgggctgcagggtgataagTCTAAGATTAATgagaacaacaaaacaaaacaacaaacaaaaaattaaatgtgaaGATATCAGTTAATAAACTCCTTTCATACTCTTATTTATCTTGAAGTTTGAGAATATGacttttccaacccaggctcattctcattacatacccctatatacgtttctgtatagaacaaaatacatcccaggattattagcagtttttattttcgcaaATTTCCGAAAAggtcactgtgtatgcttttttagatctcaaattttgttgagtgccatttgcacctgctgctctcacataaattcaccagaggccgctgtcgactgactgacttactaacTAACCAACTGACCGATGTCCTCACCCTCCCCttcccctaaactcaaccgacagtccacccatttccctaaacccaaccgacagtgttttaaaaagcaatccagaaaaagaaaatcccttgcctgatttttaccacgtttttagattttaccacattctcaccctgttatttacttgttttttttagcttgtgtttttgtcttacctgctttctggaaccgttctttaccgGACTCAAACCACATTGTCACAGTCAACTCCAACGATGTACAtgtcaagctactggacaaactggtaacatcgggaaagccgtccatacggacgTAATCGGTTAGCTgttaagcgagaaaaggaacagcgtcatacctcCCATATTGTTCCTTTTAAAGATgtaatgcagccatatgtacttcaggctacataatttacgctttccagaaatgtatatagggctacattttcaaaatgagccaatGTTGGACTTTTCATGCAAAGAATGCTCATCTCCAAGTACTCATATAACCACGTCAACTCCTGAccacccaacacaatctcaattcgtaactttttcatttagtggctaattcgtatgaattcgtacgatctaattcgtatctaatacaatttagtacgatttgctcatcccccaatgacggttggggttaggggtggggtcaggtgccacgcctcctttttaaaatcttaccatTTCGTACgtctgaactcgtacgaattcgtacgaattagccactaaactggcaaaacgtaaaatacttacgttttctcgtgagatgaGGCTGGACCACCACAGATGGATGCTTCGTTTAGGTATTGATAATGTTGTCAAGGATGTTAACAAGTCAAGGTTGTTAACAGCCCAAAGTAGTACATCATCTTGAATTCGCAGTATTAcaacaaaaatgtgaaaattaaaacTAATGGTGTATTTTAATGGTCCCCTTTAGACAACATATTGACTTTACAACTacaatttaaattagtttattaatcagGTTTAGGGTTTGTGTAAGGCGACGTGCTTGCTAAGCCAAGAAGGACGTCTGTTGCGAGACCATTCAAAAAAAAGTAGCCATAGTGCgtaatatttttccttcatctGCATTTTTCTACATGGTCTCATAAAGTAAGGCTTCTATTGGATTTTAAATGGACTCTCCAGAGGCACATTCGGGATCACGGTTGCCAGCTCATGCAGCGCCGGTAAAGTGATGCTGTGTAATGTAAAACCCTGAGTGTCTCCTCAGGTTTGTGCTGTCGTGCCGGCGCCCTCCAATGCTCTCTGGAGATCTAGAGGCCATGCGGGCAGTCTGTGATCCCGACCGGCAGACCAAACTACCACATGGGATTTATTTCCTAGCTAGACGGGTGGGCAGTTGAGGAGGACACTGATTTTAGCCCACTGTCTAAAGCTGTCAACACAATCAGAAGCAACCGGACCTCATCACCTTCCCTCTCTAAACATGGAGCATTCAAAAGTTTAGTATCTGTACGTTTTGAAGGCCACATTGATTTGACTGAAAATATTGATATAGTGTGAAATATATTAGTATTGAAAACTGTTAttgtaacaatgttttttttttaaagatagtaTAATATATTACCAttttaaaaggttagttcacccctaaataaaaaatctgttattaataAGTAATCCTCATGTTGTACCAATCTACAGAGATATTCATTCATCTTAAgaatacacacaaaaatataaattttagatgAAGTtcaagagctccctcatcctccatagtcACCAGCGGTCCCAAAGCTTTGTCAAAATAATCAAGTGAGCTCAGTGCTTCAACTTTAATCATACAAACTCCAAGAACAactttttacaacaaaaaaaagtaacaatGACTTTGTTCACCAATGTCTTCTCTTCCAAATCAAGTCAGAGTTCATGTTTACCACATGCAATATGACAGTCAGCAGTGCAACATTTAACCATTGTATTGCATATAGTAAATTTACACCCTGACCTGACACAGAAGACATAAGCAAACAAAGTTGTTGTTccaggtttttagtttttttggtggcacaaaagtgttcttggagccaCATTTGAAGAAGTCCAATGGATGTTATTTATTGGTTTAAGAAGCAGCCATATAACAATAAATCTGATAAAACAATGTAAGTATTGCTTTCAAGTAgaattttcttcatttattcattcattaattttcttttcaggttAGCCCCTTttttaattaggggtcgccacagcagaataaatcgccaacttatccagcgtatgttttttACGAAGCAGATGCCTTTTCAGCCACAACTCAAAACATCTATACAAActcttcaaacacacacatacacaacagccaccgtgacaccccagAATTTTCCTTGATCAATTAAAATTACATGAATTTGTACGATTAAGCCGCTTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045003 lncRNA downstream 420485 22590701 ~ 22591803 (-) True XLOC_022335
TCONS_00045002 lncRNA downstream 420601 22558562 ~ 22591687 (-) False XLOC_022335
TCONS_00045001 lncRNA downstream 796160 22212125 ~ 22216128 (-) True XLOC_022333
TCONS_00044733 lncRNA downstream 860498 22139777 ~ 22151790 (-) True XLOC_022332
TCONS_00045000 lncRNA downstream 1317227 21654274 ~ 21695061 (-) True XLOC_022325
TCONS_00045006 lncRNA upstream 169882 23193876 ~ 23253795 (-) True XLOC_022341
TCONS_00045007 lncRNA upstream 355471 23379465 ~ 23387225 (-) False XLOC_022343
TCONS_00044090 lncRNA upstream 355471 23379465 ~ 23449057 (-) False XLOC_022343
TCONS_00044734 lncRNA upstream 423457 23447451 ~ 23449083 (-) True XLOC_022343
TCONS_00044735 lncRNA upstream 1033416 24057410 ~ 24059462 (-) False XLOC_022345
TCONS_00044080 mRNA downstream 361296 22634442 ~ 22650992 (-) False XLOC_022337
TCONS_00044081 mRNA downstream 361620 22634933 ~ 22650668 (-) False XLOC_022337
TCONS_00044078 mRNA downstream 389173 22578482 ~ 22623115 (-) True XLOC_022336
TCONS_00044079 mRNA downstream 414286 22590623 ~ 22598002 (-) False XLOC_022335
TCONS_00044077 mRNA downstream 488985 22496314 ~ 22523303 (-) True XLOC_022334
TCONS_00044086 mRNA upstream 102136 23126130 ~ 23179417 (-) False XLOC_022340
TCONS_00044085 mRNA upstream 102136 23126130 ~ 23179417 (-) False XLOC_022340
TCONS_00044087 mRNA upstream 103296 23127290 ~ 23160088 (-) True XLOC_022340
TCONS_00044088 mRNA upstream 230982 23254976 ~ 23256726 (-) True XLOC_022342
TCONS_00044089 mRNA upstream 375526 23399520 ~ 23401305 (-) False XLOC_022343
TCONS_00044084 other downstream 148717 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044083 other downstream 361710 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044082 other downstream 364606 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044058 other downstream 1497942 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044044 other downstream 2673691 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044095 other upstream 1124344 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044112 other upstream 1419188 24443182 ~ 24444254 (-) False XLOC_022355
TCONS_00044122 other upstream 1547862 24571856 ~ 24582421 (-) True XLOC_022362
TCONS_00044126 other upstream 1651213 24675207 ~ 24675303 (-) True XLOC_022366
TCONS_00044131 other upstream 1825493 24849487 ~ 24849604 (-) True XLOC_022369

Expression Profile

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