RNA id: TCONS_00044734


Basic Information

Item Value
RNA id TCONS_00044734
length 924
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_022343
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 23379465 ~ 23449083 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CACAAAGCCCCTGGTCCTGACCCAGTTGTTCCTGGCATATCTTTCCTCCCCCAGTCCAGGCCTTTGAAAGCTGGAGAAAAGCTGGAGTGTGCTTGCCCTGTCAGGAACAATGGAAGAGTTAGTGACCCCTGACCTCAAGGGCTTTGAGATTTCTTCCTGGATCAGGAGCTGCCTTTCTCCATGGTTGGTTACTGCACTGCAGCTCAGGAACAGAATGAGGATGCTGAGCATGTGGCTGTACAGCAAAAGCAGGCTGAGAGCGGCCTGTGAGGGGTCTATGAGTGGGCAGAAACATATGGGCTGAAAAAGGAGACCCACTGGGGCTTGCAGCTCCAGGGACCGTGGAAGGCTTTGTCTTGGGCCCAGCCCTCCACAGCACTTAATAGTGCAGAACAGCATTGTACAGTATTGTCAAGTGCTGCCTGTCTTTAGTGTGTGGACACCCATGAAAAGAGACCCTCTTCTGCtttctctctcactttctttTGCTCAGTAGGTGTTTTAGTGCTTTTCTTTTAACCCATTCTTTTTGTCAAATCACCTCTCTGCTTCCTTTTTGGCTTTTTTTGTCCAATCTGAAATGTTCTCTTGACTGATGACCAGAGAGGGACTAAGTGAACCAATTTCCATTTCTGTATTGTCTGTGTGTCCTTAGTCCCATAAAGCAAAAATCTGTAGCTACAGCTGCTACAATACTATGGCTAAAGTAGCTGTTGTGTTTTAAGAGTTGTGGTCTGTAAAGGTTAAACACCTACTCTAGATTAAGACTTATGCGATATGTAGTGGATTAAGGTCTGGAAGAAATGATTGTAAGTCTGTTTGTTTTCAAGAGAAGAAAAACTACAGCATTTACCAATGCTTTACATTAAACAGCCCAGGCACATTGGAATtacatgcttcagcctacatttttgtgaaaccgcA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0021536 diencephalon development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0022612 gland morphogenesis biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:1990399 epithelium regeneration biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0006413 translational initiation biological_process
GO:0060429 epithelium development biological_process
GO:0048850 hypophysis morphogenesis biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048852 diencephalon morphogenesis biological_process
GO:0048853 forebrain morphogenesis biological_process
GO:0048855 adenohypophysis morphogenesis biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0033504 floor plate development biological_process
GO:0033505 floor plate morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0021983 pituitary gland development biological_process
GO:0021984 adenohypophysis development biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0007417 central nervous system development biological_process
GO:0007418 ventral midline development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0030900 forebrain development biological_process
GO:0030902 hindbrain development biological_process
GO:0021508 floor plate formation biological_process
GO:0021510 spinal cord development biological_process
GO:0021511 spinal cord patterning biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005832 chaperonin-containing T-complex cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0101031 chaperone complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0003743 translation initiation factor activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:0051082 unfolded protein binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045007 lncRNA downstream 60226 23379465 ~ 23387225 (-) False XLOC_022343
TCONS_00045006 lncRNA downstream 193656 23193876 ~ 23253795 (-) True XLOC_022341
TCONS_00045005 lncRNA downstream 423456 23012288 ~ 23023995 (-) True XLOC_022339
TCONS_00045004 lncRNA downstream 423457 23012288 ~ 23023994 (-) False XLOC_022339
TCONS_00045003 lncRNA downstream 855648 22590701 ~ 22591803 (-) True XLOC_022335
TCONS_00044735 lncRNA upstream 608327 24057410 ~ 24059462 (-) False XLOC_022345
TCONS_00045008 lncRNA upstream 609562 24058645 ~ 24115957 (-) True XLOC_022345
TCONS_00044096 lncRNA upstream 699255 24148338 ~ 24167350 (-) True XLOC_022346
TCONS_00045009 lncRNA upstream 735438 24184521 ~ 24186651 (-) False XLOC_022348
TCONS_00044100 lncRNA upstream 735438 24184521 ~ 24187176 (-) True XLOC_022348
TCONS_00044089 mRNA downstream 46146 23399520 ~ 23401305 (-) False XLOC_022343
TCONS_00044088 mRNA downstream 190725 23254976 ~ 23256726 (-) True XLOC_022342
TCONS_00044086 mRNA downstream 268034 23126130 ~ 23179417 (-) False XLOC_022340
TCONS_00044085 mRNA downstream 268034 23126130 ~ 23179417 (-) False XLOC_022340
TCONS_00044087 mRNA downstream 287363 23127290 ~ 23160088 (-) True XLOC_022340
TCONS_00044092 mRNA upstream 596949 24046032 ~ 24047054 (-) False XLOC_022344
TCONS_00044091 mRNA upstream 596949 24046032 ~ 24047054 (-) True XLOC_022344
TCONS_00044093 mRNA upstream 690960 24140043 ~ 24146591 (-) False XLOC_022346
TCONS_00044094 mRNA upstream 690995 24140078 ~ 24148646 (-) False XLOC_022346
TCONS_00044097 mRNA upstream 721588 24170671 ~ 24190712 (-) False XLOC_022347
TCONS_00044084 other downstream 583880 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044083 other downstream 796873 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044082 other downstream 799769 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044058 other downstream 1933105 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044044 other downstream 3108854 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044095 other upstream 699255 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044112 other upstream 994099 24443182 ~ 24444254 (-) False XLOC_022355
TCONS_00044122 other upstream 1122773 24571856 ~ 24582421 (-) True XLOC_022362
TCONS_00044126 other upstream 1226124 24675207 ~ 24675303 (-) True XLOC_022366
TCONS_00044131 other upstream 1400404 24849487 ~ 24849604 (-) True XLOC_022369

Expression Profile

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