RNA id: TCONS_00044081


Basic Information

Item Value
RNA id TCONS_00044081
length 1965
RNA type mRNA
GC content 0.45
exon number 9
gene id XLOC_022337
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 22634442 ~ 22650992 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTTCACTAAAATGACCGTGTTGCTACACGCCTTTGGTATTCTGGGTGTACACTGTTGCAATCAATGTTACCCTCAGTACCGCTTTATTCTGCCATGAACAAGAGAACAGCATGAGAAACAGTTCAGAGCACAGGCAGCATCACAATCACAGAGCATGGAGCAGCTGACTCTAGTCCTGCTATTCGTCACTTCGCTGAATTTCGCATCGGCTGGAGTAGATGGAGATTATTGGACATATTCAGGAGAGCTGGATCAGAAGCACTGGGCAGAAAAATATCATGACTGCGGTGGCCAACAACAGTCTCCCATTGACATACAGCGGCGAAAGGTGCGATATAGTCCACGAATGCAACAGCTCGAGCTGACAGGTTATGAAGACATCCGCGGTTCCTTTCTCATGAAGAACAATGGCCATTCTGtGGAAATTCAGCTGCCAAGCACCATGAAGATTACCAAGGGGTTTCCACACCAATACACCGCCGTCCAAATGCATCTGCACTGGGGAGGCTGGGACTTGGAGGCCAGTGGATCAGAGCACACAATGGACGGCATTCGCTACATGGCAGAACTTCACGTTGTCCACTACAACTCTGAAAAGTACCCCAGCTTTGAAGAAGCCAAAAATAAACCTGATGGTCTTGCAGTTTTAGCCTTCTTTTTTGAGGATGGGCATTTTGAGAACACGtactacagtgattttatttcaaACCTGGCAAACATCAAATACGTAGGTCAGTCCATGAGCATCTCCAACCTGAATGTTCTCTCCATGCTGTCAGAGAACCTTAGTCACTTCTACAGATATAAAGGCTCTCTGACCACACCGCCCTGTTTTGAGAGCGTCATGTGGACAGTGTTCGATACGCCGATCACCCTCTCGCACAACCAGATCAGGAAATTGGAGAGCACATTAATGGACCATGACAATAAGACCCTGTGGAACGACTACCGCATGGCCCAACCTCTGAATGAAAGAGTGGTGGAGTCTACTTTCCTCCCACGTCTCAGCAAAGGAGGAATGTGCCGTCAAGAGGAGATTGAAGCTAAGCTTAAAAGGATCGAGAGCCTTATTTTGTCACTGGACAAAAAAGCGGTTCAAGGCAAGCAACCTATATCTCCCCTGGTCCTCTACTTCCCGCAGAAAAATGTGGAAAGCTTCGCCGTGGTGAACTTAACACATCCCATGGAGCTCAAATCCTTCACAGCCTGCATGAATGTCCAAATTCCCCCAATTCGAGATCTGACTGTGCTTTCATACTCCACGTCCCACGACAATGAGCTCATGATCTCCTTAGGCTCTGAAGTGGGTCTCTGGATCGGAGATGAGTTTGTAAATCTGAGTTTCGATCTTCCATCAAGTGACTGGACAAACTACTGCCTTACCTGGGCATCACACAACGGAGGGGCTGAGCTGTGGGTGAACGGGGTAGTCGGAAAGGAACGCTACATTAGGACAGGGTACATCATTCCTGCTGGAGGAAGACTCATTTTGGGGAAGGACCAGGACGGGTTTTTAGGGATTTCAGTTAACGATGCTTTTGTCGGTCATATGAGTGATGTAAACATTTGGGATTATGTGTTAACTGAGGGAGAGATTGTTGAGCAGATGTCGTGTGACAATGGGAAAGTGAAGGGGAACGTCCTGAGCTGGGGAGTCACTCAGCTCAGTCTGTATGGAGGAGTTCAGCTGCAGGGCGAACAGGTTTGCCAtcgggataataataataatagagaaaCAGAGAAATAGAAAGAACAACAGGCTTTTAAACGAATGTTAATATCATCAATAATTAGCTATATTGCTAACTTGTACTGTATGCTCTCCCAGGGGAACAACTGCAATTGTACACATAATGATAATGTGATATTCTATCTATCTGTGTTTTACCAGTGTATTTTTAGCCAGCTGAATAATGGAAATCATAtctaaaaaaagtataataaatgatatttgcattctta

Function

GO:

id name namespace
GO:0006730 one-carbon metabolic process biological_process
GO:0036269 swimming behavior biological_process
GO:0005615 extracellular space cellular_component
GO:0009986 cell surface cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016829 lyase activity molecular_function
GO:0016836 hydro-lyase activity molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004089 carbonate dehydratase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-7091 Enables carbonate dehydratase activity. Acts upstream of or within swimming behavior. Located in cell surface. Is expressed in several structures, including cardiovascular system; fin; gill; integument; and pleuroperitoneal region. Orthologous to human CA6 (carbonic anhydrase 6).

Ensembl:

ensembl_id ENSDART00000132733

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045003 lncRNA downstream 43130 22590701 ~ 22591803 (-) True XLOC_022335
TCONS_00045002 lncRNA downstream 43246 22558562 ~ 22591687 (-) False XLOC_022335
TCONS_00045001 lncRNA downstream 418805 22212125 ~ 22216128 (-) True XLOC_022333
TCONS_00044733 lncRNA downstream 483143 22139777 ~ 22151790 (-) True XLOC_022332
TCONS_00044064 lncRNA downstream 942510 21683776 ~ 21692423 (-) True XLOC_022326
TCONS_00045004 lncRNA upstream 361620 23012288 ~ 23023994 (-) False XLOC_022339
TCONS_00045005 lncRNA upstream 361620 23012288 ~ 23023995 (-) True XLOC_022339
TCONS_00045006 lncRNA upstream 543208 23193876 ~ 23253795 (-) True XLOC_022341
TCONS_00045007 lncRNA upstream 728797 23379465 ~ 23387225 (-) False XLOC_022343
TCONS_00044090 lncRNA upstream 728797 23379465 ~ 23449057 (-) False XLOC_022343
TCONS_00044078 mRNA downstream 11818 22578482 ~ 22623115 (-) True XLOC_022336
TCONS_00044079 mRNA downstream 36931 22590623 ~ 22598002 (-) False XLOC_022335
TCONS_00044077 mRNA downstream 111630 22496314 ~ 22523303 (-) True XLOC_022334
TCONS_00044075 mRNA downstream 504155 22063496 ~ 22130778 (-) False XLOC_022331
TCONS_00044074 mRNA downstream 521478 22063484 ~ 22113455 (-) False XLOC_022331
TCONS_00044086 mRNA upstream 475462 23126130 ~ 23179417 (-) False XLOC_022340
TCONS_00044085 mRNA upstream 475462 23126130 ~ 23179417 (-) False XLOC_022340
TCONS_00044087 mRNA upstream 476622 23127290 ~ 23160088 (-) True XLOC_022340
TCONS_00044088 mRNA upstream 604308 23254976 ~ 23256726 (-) True XLOC_022342
TCONS_00044089 mRNA upstream 748852 23399520 ~ 23401305 (-) False XLOC_022343
TCONS_00044058 other downstream 1120587 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044044 other downstream 2296336 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044043 other downstream 2306311 20325698 ~ 20328622 (-) False XLOC_022305
TCONS_00044031 other downstream 2508722 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044084 other upstream 212789 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044095 other upstream 1497670 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044112 other upstream 1792514 24443182 ~ 24444254 (-) False XLOC_022355
TCONS_00044122 other upstream 1921188 24571856 ~ 24582421 (-) True XLOC_022362
TCONS_00044126 other upstream 2024539 24675207 ~ 24675303 (-) True XLOC_022366

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_07565885_07567962.mRNA True 1340 mRNA 0.44 3 CI01000001 7565370 ~ 7567962 (-)