RNA id: TCONS_00044043


Basic Information

Item Value
RNA id TCONS_00044043
length 199
RNA type processed_transcript
GC content 0.40
exon number 2
gene id XLOC_022305
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20261570 ~ 20338597 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ActcacacttttttttcattacaaACCCTCAGCCTCACACATTTACAACCTTTTTCCCTCcaaggattttctttttcttagaaAATCTCTATCCAAAGGATATTTGTGAGCTTGCATGGCTGCGCCCCTGGAAACCAGCTGCTCATGTTGATTTTATAGCCCATAATGATGGAGAGATATTTCAGTGTTCTGCTTCTTG

Function

GO:

id name namespace
GO:0034446 substrate adhesion-dependent cell spreading biological_process
GO:0016477 cell migration biological_process
GO:0070831 basement membrane assembly biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0009888 tissue development biological_process
GO:0006508 proteolysis biological_process
GO:0043256 laminin complex cellular_component
GO:0004222 metalloendopeptidase activity molecular_function
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDART00000136204

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044034 lncRNA downstream 195298 20128117 ~ 20130400 (-) True XLOC_022301
TCONS_00044025 lncRNA downstream 274329 20014033 ~ 20051369 (-) True XLOC_022298
TCONS_00044026 lncRNA downstream 308766 20014033 ~ 20016932 (-) False XLOC_022298
TCONS_00044730 lncRNA downstream 380276 19944225 ~ 19945422 (-) False XLOC_022295
TCONS_00044731 lncRNA downstream 380399 19944283 ~ 19945299 (-) True XLOC_022295
TCONS_00044990 lncRNA upstream 19837 20348459 ~ 20354924 (-) True XLOC_022307
TCONS_00044991 lncRNA upstream 90511 20419133 ~ 20421216 (-) False XLOC_022310
TCONS_00044992 lncRNA upstream 90511 20419133 ~ 20421573 (-) True XLOC_022310
TCONS_00044993 lncRNA upstream 188987 20517609 ~ 20518851 (-) False XLOC_022312
TCONS_00044050 lncRNA upstream 189074 20517696 ~ 20518184 (-) True XLOC_022312
TCONS_00044041 mRNA downstream 16193 20261570 ~ 20309505 (-) False XLOC_022305
TCONS_00044040 mRNA downstream 67208 20180159 ~ 20258490 (-) True XLOC_022304
TCONS_00044038 mRNA downstream 148171 20149231 ~ 20177527 (-) False XLOC_022303
TCONS_00044037 mRNA downstream 150024 20146109 ~ 20175674 (-) False XLOC_022303
TCONS_00044039 mRNA downstream 150024 20149429 ~ 20175674 (-) True XLOC_022303
TCONS_00044045 mRNA upstream 11578 20340200 ~ 20345473 (-) True XLOC_022306
TCONS_00044046 mRNA upstream 28625 20357247 ~ 20361971 (-) False XLOC_022308
TCONS_00044047 mRNA upstream 28755 20357377 ~ 20363261 (-) True XLOC_022308
TCONS_00044048 mRNA upstream 44692 20373314 ~ 20374396 (-) True XLOC_022309
TCONS_00044049 mRNA upstream 100217 20428839 ~ 20429741 (-) True XLOC_022311
TCONS_00044029 other downstream 199451 20113791 ~ 20126247 (-) False XLOC_022300
TCONS_00044031 other downstream 199487 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044032 other downstream 200700 20122112 ~ 20124998 (-) True XLOC_022300
TCONS_00044030 other downstream 206947 20114060 ~ 20118751 (-) False XLOC_022300
TCONS_00044020 other downstream 417754 19907828 ~ 19907944 (-) True XLOC_022294
TCONS_00044058 other upstream 1170963 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044082 other upstream 2314782 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044083 other upstream 2315042 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044084 other upstream 2534835 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044095 other upstream 3819716 24148338 ~ 24167317 (-) False XLOC_022346

Expression Profile

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