RNA id: TCONS_00044731


Basic Information

Item Value
RNA id TCONS_00044731
length 776
lncRNA type intronic
GC content 0.31
exon number 2
gene id XLOC_022295
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19944173 ~ 19945422 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taaaatggtttttaaaaatgtaataactgcttttattcaagccaaacagactttctccagaagaaaaaatattatcagacatactgtgaaaatttccttgctctgttaaacaaaaaaaaaataataataaataaaaaaatcaaagggggctaataattctgacttcaactgtacatgcatacAAATTTTGTATGCATACAGTCCAGTTCGGTTTTAAGCCTTATTAATCCCCTTTGGACAATTCATTCGGACATGATGTCGCCAAAAGGGCATCCactcaaaatatttgtttatctCCTATTATTTTATGTGCCATCCTCAACATCTGCTGTTCATAATAGAATGCAAGACTTCGCAGAGGAACTCCCAAAATTTTTGAGCACAAATTCACAATGCCTTAAACATGATTCTTGTTTTTTATAAACAGTGAGGGAAAACCAACAAATAAAGGAAAaggacaaaatattttaaataaatgatttataaaaggTCTTAGGAATAACTCTCTCAACATAAAAAGGGTTGGGTTTTCACAATAAAAACAGTCTCTGCTGAGCCTTATTAataattgtatgtgtgttttgatcAAATTTCAACCTGTTGTCAATAATTGTTTCTATAGATATTGCTTCATCACCTCgaattatagaccattttgagggatgtaaacaaaagcaatggtcccaacatatttcctgttttacatttttagtttctagagcttcagagaatccaaaaagagccacatattgataaataatgttaggatagctgtt

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0008152 metabolic process biological_process
GO:0046034 ATP metabolic process biological_process
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0034220 ion transmembrane transport biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009060 aerobic respiration biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0006120 mitochondrial electron transport, NADH to ubiquinone biological_process
GO:0006123 mitochondrial electron transport, cytochrome c to oxygen biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0044237 cellular metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0019646 aerobic electron transport chain biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0044281 small molecule metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0006793 phosphorus metabolic process biological_process
GO:0006796 phosphate-containing compound metabolic process biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0006812 cation transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005751 mitochondrial respiratory chain complex IV cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070069 cytochrome complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:1902494 catalytic complex cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0097525 spliceosomal snRNP complex cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0022853 active ion transmembrane transporter activity molecular_function
GO:0003954 NADH dehydrogenase activity molecular_function
GO:0022857 transmembrane transporter activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0050136 NADH dehydrogenase (quinone) activity molecular_function
GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0005215 transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0042625 ATPase-coupled ion transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function
GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044013 lncRNA downstream 119085 19822434 ~ 19825198 (-) False XLOC_022292
TCONS_00044008 lncRNA downstream 228486 19712560 ~ 19715797 (-) False XLOC_022290
TCONS_00044011 lncRNA downstream 228486 19714481 ~ 19715797 (-) True XLOC_022290
TCONS_00044010 lncRNA downstream 228606 19713864 ~ 19715677 (-) False XLOC_022290
TCONS_00044006 lncRNA downstream 230753 19712560 ~ 19713530 (-) False XLOC_022290
TCONS_00044026 lncRNA upstream 68734 20014033 ~ 20016932 (-) False XLOC_022298
TCONS_00044025 lncRNA upstream 68734 20014033 ~ 20051369 (-) True XLOC_022298
TCONS_00044034 lncRNA upstream 182818 20128117 ~ 20130400 (-) True XLOC_022301
TCONS_00044990 lncRNA upstream 403160 20348459 ~ 20354924 (-) True XLOC_022307
TCONS_00044991 lncRNA upstream 473834 20419133 ~ 20421216 (-) False XLOC_022310
TCONS_00044018 mRNA downstream 10658 19838130 ~ 19933625 (-) False XLOC_022293
TCONS_00044015 mRNA downstream 112544 19823298 ~ 19831739 (-) False XLOC_022292
TCONS_00044014 mRNA downstream 116872 19822688 ~ 19827411 (-) False XLOC_022292
TCONS_00044005 mRNA downstream 228484 19712558 ~ 19715799 (-) False XLOC_022290
TCONS_00044021 mRNA upstream 23657 19968956 ~ 19977214 (-) True XLOC_022296
TCONS_00044022 mRNA upstream 39509 19984808 ~ 20010579 (-) False XLOC_022297
TCONS_00044023 mRNA upstream 39933 19985232 ~ 20002459 (-) True XLOC_022297
TCONS_00044024 mRNA upstream 68731 20014030 ~ 20051369 (-) False XLOC_022298
TCONS_00044027 mRNA upstream 123581 20068880 ~ 20100436 (-) True XLOC_022299
TCONS_00044020 other downstream 36339 19907828 ~ 19907944 (-) True XLOC_022294
TCONS_00044019 other downstream 60729 19879545 ~ 19883554 (-) False XLOC_022293
TCONS_00044016 other downstream 112643 19827733 ~ 19831640 (-) True XLOC_022292
TCONS_00044012 other downstream 119085 19822434 ~ 19825198 (-) False XLOC_022292
TCONS_00044009 other downstream 231055 19713095 ~ 19713228 (-) True XLOC_022291
TCONS_00044029 other upstream 168492 20113791 ~ 20126247 (-) False XLOC_022300
TCONS_00044030 other upstream 168761 20114060 ~ 20118751 (-) False XLOC_022300
TCONS_00044031 other upstream 175704 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044032 other upstream 176813 20122112 ~ 20124998 (-) True XLOC_022300
TCONS_00044043 other upstream 380399 20325698 ~ 20328622 (-) False XLOC_022305

Expression Profile

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