RNA id: TCONS_00044016


Basic Information

Item Value
RNA id TCONS_00044016
length 887
RNA type processed_transcript
GC content 0.43
exon number 7
gene id XLOC_022292
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 19822434 ~ 19831739 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACTCTTCAGGTAGTTTGCATATCTTCATACACCCGCCACACACGCTGCCACGAGACATTTCATAATTTCATTACGCTTTGCAAACTTAAAACCAGCTGTTTTGTGTCATTAGTAGAACTTAACATCTAAATAGCTAACGTTACATCAGTTGCTAGtttttaagctaacgttagcgGCGATTGTATATAGTAACAGGTATaaacagtcattattattatttcatcacTTGAACGAAGAGTTTGGGTTGTCCCCTGGTGGATGGACTGTACCTGAGGGAGGCAGATAGCGTTCAGGAGCTCCTCTGCACTCCGTCTTTTCACAGGACTGATATACTCAAGTGGATCTGCGCCAGCATCTGTCCATCCTTAAAGGAAAAGTTTTCCTCTATTAAATCAACTCCTAATGAAGAATCGATTGAAGAGCTCACAAGGTTTGGTTATGAGATGATGTTATGTAAAGCTAACGACAAGGATTTAATCAAGGGTCTTGCACCGCCTTTACGACAGCTGGTGTTTCTAGAGCAGCTTCTAAGGGTTATTCAAGCAGACTCCTCTCTGTGCTCTGGGCAGAACTCATCTTCTGGAGATGAAGGTGTAAAGAGCAATGATCTTCTTGAAGAACTGATCTCTCAGGATCATTTACCTGACCTCTACATGCTTCTGGATCCAGCCTGCAATCCATGGCCTGCACACATCCGTGAACATCTGATACGCACACATTCGGCTCACAACAAAATCAATGGGAACCACAGTAAATTCAGTGATTTCGTAAGCAGGAGTGATCAAGATTCCCGACTTGTAAGTCATGGAGAAGAAAGCTTGACGGAGGCCATGGCACTTCTGAAGTCTACTCAAAGCACATTAGATGAGCTCCATAAAGAGGTGGAA

Function

GO:

id name namespace
GO:0072698 protein localization to microtubule cytoskeleton biological_process
GO:0090085 regulation of protein deubiquitination biological_process
GO:0010569 regulation of double-strand break repair via homologous recombination biological_process
GO:0044380 protein localization to cytoskeleton biological_process
GO:0004519 endonuclease activity molecular_function
GO:0140097 catalytic activity, acting on DNA molecular_function

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050506-15 Predicted to enable microtubule minus-end binding activity. Predicted to be involved in centrosome cycle and spindle assembly. Predicted to act upstream of or within cell adhesion and tissue regeneration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of HAUS complex. Orthologous to human HAUS7 (HAUS augmin like complex subunit 7).

Ensembl:

ensembl_id ENSDART00000054479

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044013 lncRNA downstream 2535 19822434 ~ 19825198 (-) False XLOC_022292
TCONS_00044008 lncRNA downstream 111936 19712560 ~ 19715797 (-) False XLOC_022290
TCONS_00044011 lncRNA downstream 111936 19714481 ~ 19715797 (-) True XLOC_022290
TCONS_00044010 lncRNA downstream 112056 19713864 ~ 19715677 (-) False XLOC_022290
TCONS_00044006 lncRNA downstream 114203 19712560 ~ 19713530 (-) False XLOC_022290
TCONS_00044728 lncRNA upstream 102262 19933902 ~ 19953089 (-) True XLOC_022293
TCONS_00044732 lncRNA upstream 112533 19944173 ~ 19944936 (-) False XLOC_022295
TCONS_00044729 lncRNA upstream 112533 19944173 ~ 19945058 (-) False XLOC_022295
TCONS_00044730 lncRNA upstream 112585 19944225 ~ 19945422 (-) False XLOC_022295
TCONS_00044731 lncRNA upstream 112643 19944283 ~ 19945299 (-) True XLOC_022295
TCONS_00044014 mRNA downstream 322 19822688 ~ 19827411 (-) False XLOC_022292
TCONS_00044004 mRNA downstream 111874 19712557 ~ 19715859 (-) False XLOC_022290
TCONS_00044003 mRNA downstream 111912 19712557 ~ 19715821 (-) False XLOC_022290
TCONS_00044005 mRNA downstream 111934 19712558 ~ 19715799 (-) False XLOC_022290
TCONS_00044007 mRNA downstream 112176 19712635 ~ 19715557 (-) False XLOC_022290
TCONS_00044017 mRNA upstream 2575 19834215 ~ 19953089 (-) False XLOC_022293
TCONS_00044018 mRNA upstream 6490 19838130 ~ 19933625 (-) False XLOC_022293
TCONS_00044021 mRNA upstream 137316 19968956 ~ 19977214 (-) True XLOC_022296
TCONS_00044022 mRNA upstream 153168 19984808 ~ 20010579 (-) False XLOC_022297
TCONS_00044023 mRNA upstream 153592 19985232 ~ 20002459 (-) True XLOC_022297
TCONS_00044012 other downstream 2535 19822434 ~ 19825198 (-) False XLOC_022292
TCONS_00044009 other downstream 114505 19713095 ~ 19713228 (-) True XLOC_022291
TCONS_00043992 other downstream 324203 19494537 ~ 19503530 (-) True XLOC_022286
TCONS_00043987 other downstream 518823 19308796 ~ 19308910 (-) True XLOC_022283
TCONS_00043982 other downstream 674406 19148586 ~ 19153327 (-) False XLOC_022279
TCONS_00044019 other upstream 47905 19879545 ~ 19883554 (-) False XLOC_022293
TCONS_00044020 other upstream 76188 19907828 ~ 19907944 (-) True XLOC_022294
TCONS_00044029 other upstream 282151 20113791 ~ 20126247 (-) False XLOC_022300
TCONS_00044030 other upstream 282420 20114060 ~ 20118751 (-) False XLOC_022300
TCONS_00044031 other upstream 289363 20121003 ~ 20126211 (-) False XLOC_022300

Expression Profile

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