XLOC_022301 (lrrc23)


Basic Information

Item Value
gene id XLOC_022301
gene name lrrc23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20127883 ~ 20133994 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044033
ATGGTAACAGCCATAAACACTCATCAGCGCGAGGTGAGTGACAGAAAACTTGTTCGGACATCGGGATCATATAATCCATTTGTAATTTTTGAGTTATTAATGTTACAGGAAATGATCATAAATTGTTTAACGTTACAAGTAAAATAGTTATTTTCAGTGCATCCTGTCTGTTAAGTTACTAACAAGCAAGCTAAAGTTAGCCAGCATGCTAATGATGTAAATTGATCGATCTAAATTCCCAATCATTTATTTCAACCCGTGAAAAGTTGATCGACAAGGTAGTTAAGATAGAAGAATAATGTCAGACTCTGGTGAAGATGAGGTATTGAAAGCAGACTCTGATCATGAGGGAGAGAATGAGGATCTGGAAGAGAAAGAGAAATCAGATGGAGATCAGCTAGAGTCTTGTCCACTAACCCAGGACATTTTAGCGAGAAGTTTATCTTTGCTATGTCGCACAGGGAATGGTCTGTCTCATGCCTATGTCAGACTTGATCTTAAAAATAAgggtctgACAGACCTAGCCTTGCTCAGCTCCTACATCCATCTGCGTTATTTGGACCTGTCCTCCAATCATTTGTCAGACTTCTCTCCACTGGCTGGCCTCACTCAGCTGCTGTGGGTGAAGGGAGACAGCAACCTGCTTCAGGGCTTTGAGGGACAGCCTTTCGGTCAGCTCACTTTCCTGCAGTGGCTCAGCATTGCAAGCAATCGGCTGTTTGATGTGAAGGGTCTCGGAGGCCCAGCACTGGAAACCCTCAATCTTACTGGTAATGGCATCCAGACCATGCAGGGCCTGGATCATCCAAATCTGACCAATCTGGTgactctggagctcagaggaaaTTGTTTGGAAACAACAGATGGCATTTACCTGCCCAACTTACGCCATTTGTATCTGGCTCAGAACAATATAAAGAAACTGGAGGGTCTGGAAAAGCTTGAGCGTCTCATCACTCTTCACCTCAGACATAACCAGTTAGAAACACTGGATGGACTCAGTGCCAGTATGAAATGCCTCGAGTATCTTAATGTCAGgggGAACCTTATATCTTCTATGAGGGCTTTGCAGACTCTGGCAAGTGTGGGGCAAACACTAAAGGCACTTGTGCTTTTGGACAACCCTATTGCGAAGACTGACGATTACAGGCTTTATGTGATCTCACAACTTCCCCACCTGGAACGAGTGGACAAAGATCCCGTCACACCTGAAGAAAAATTTGAGGCACAAAAAAAGGAGTTTGAAGATGACAATGCTGAAGATCAAGAGGACGACTGAATAGTCTGTGCCAAAtatgattttatatttaataaagtcTAGACTGGCTGTCCATTTAGTGCATGTGATTTGTAAGGGTGTATAGCTGTTAATGAAAATGAGTAAGACTTATCACTAGATATGATATAACAAGTATCTTTGTAATCTAATGCCAAGGAATAAAACAAGACATCTCAAAAAGGTTTGCAGTCTAATTAAAATCTGTTAAAAAGACACAATTAAGAATGTGAGTATTGGAATATTAAACCATTTCTATGTGTA
>TCONS_00044034
CCAAATCTGACCAATCTGGTgactctggagctcagaggaaaTTGTTTGGAAACAACAGATGGCATTTACCTGCCCAACTTACGCCATTTGTATCTGGTAGCTGCTCTTGTTGATGTTTATTGTGGATTAAAAGTACACAGTAGTGCTTATCTCCAAATAACTATCATCTTGGACATTCACCAAACTATTTAGGCTCAGAACAATATAAAGAAACTGGAGGGTCTGGAAAAGCTTGAGCGTCTCATCACTCTTCACCTCAGACATAACCAGTTAGAAACACTGGATGGACTCAGTGCCAGTATGAAATGCCTCGAGTATCTTAATGTCAGgggGAACCTTATATCTTCTATGAGGGCTTTGCAGACTCTGGCAAGTGTGGGGCAAACACTAAAGGCACTTGTGCTTTTGGACAACCCTATTGCGAAGACTGACGATTACAGGCTTTATGTGATCTCACAACTTCCCCACCTGGAACGAGTGGACAAAGATCCCGTCACACCTGAAGAAAAATTTGAGGCACAAAAAAAGGAGTTTGAAGATGACAATGCTGAAGATCAAGAGGACGACTGAATAGTCTGTGCCAAAtatgattttata

Function

symbol description
lrrc23 Acts upstream of or within cilium movement involved in otolith formation. Predicted to be active in cytosol. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; pronephric duct; and spinal cord neural keel. Orthologous to human LRRC23 (leucine rich repeat containing 23).

GO:

id name namespace
GO:0003355 cilium movement involved in otolith formation biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-153 Acts upstream of or within cilium movement involved in otolith formation. Predicted to be active in cytosol. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; pronephric duct; and spinal cord neural keel. Orthologous to human LRRC23 (leucine rich repeat containing 23).

Ensembl:

ensembl_id ENSDARG00000006174

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044033 False 1540 mRNA 0.42 7 20127883 20133994
TCONS_00044034 True 597 lncRNA 0.42 3 20128117 20130400

Neighbor

gene id symbol gene type direction distance location
XLOC_022300 tktb coding downstream 1626 20113378 ~ 20126257 (-)
XLOC_022299 si:dkey-32e6.6 coding downstream 27447 20068880 ~ 20100436 (-)
XLOC_022298 bgnb coding downstream 76514 20014030 ~ 20051369 (-)
XLOC_022297 b4galt3 coding downstream 117304 19984808 ~ 20010579 (-)
XLOC_022296 ccnq coding downstream 150669 19968956 ~ 19977214 (-)
XLOC_022302 si:dkey-32e6.3 coding upstream 3526 20137520 ~ 20143211 (-)
XLOC_022303 usp19 coding upstream 11306 20145300 ~ 20177527 (-)
XLOC_022304 lamb2 coding upstream 46165 20180159 ~ 20258490 (-)
XLOC_022305 lamb2l coding upstream 127576 20261570 ~ 20338597 (-)
XLOC_022306 si:rp71-17i16.6 coding upstream 206206 20340200 ~ 20345473 (-)
XLOC_022295 NA non-coding downstream 182461 19944173 ~ 19945422 (-)
XLOC_022294 CT574579.1 non-coding downstream 219939 19907828 ~ 19907944 (-)
XLOC_022292 NA non-coding downstream 296144 19822434 ~ 19831739 (-)
XLOC_022291 CR352234.4 non-coding downstream 414655 19713095 ~ 19713228 (-)
XLOC_022284 NA non-coding downstream 655264 19467540 ~ 19472619 (-)
XLOC_022307 NA non-coding upstream 214465 20348459 ~ 20354924 (-)
XLOC_022310 NA non-coding upstream 285139 20419133 ~ 20421573 (-)
XLOC_022312 NA non-coding upstream 383615 20517609 ~ 20518851 (-)
XLOC_022314 NA non-coding upstream 695351 20829345 ~ 20836604 (-)
XLOC_022315 NA non-coding upstream 724319 20858313 ~ 20938578 (-)

Expression


Co-expression Network