RNA id: TCONS_00044033


Basic Information

Item Value
RNA id TCONS_00044033
length 1540
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_022301
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20127883 ~ 20133994 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGTAACAGCCATAAACACTCATCAGCGCGAGGTGAGTGACAGAAAACTTGTTCGGACATCGGGATCATATAATCCATTTGTAATTTTTGAGTTATTAATGTTACAGGAAATGATCATAAATTGTTTAACGTTACAAGTAAAATAGTTATTTTCAGTGCATCCTGTCTGTTAAGTTACTAACAAGCAAGCTAAAGTTAGCCAGCATGCTAATGATGTAAATTGATCGATCTAAATTCCCAATCATTTATTTCAACCCGTGAAAAGTTGATCGACAAGGTAGTTAAGATAGAAGAATAATGTCAGACTCTGGTGAAGATGAGGTATTGAAAGCAGACTCTGATCATGAGGGAGAGAATGAGGATCTGGAAGAGAAAGAGAAATCAGATGGAGATCAGCTAGAGTCTTGTCCACTAACCCAGGACATTTTAGCGAGAAGTTTATCTTTGCTATGTCGCACAGGGAATGGTCTGTCTCATGCCTATGTCAGACTTGATCTTAAAAATAAgggtctgACAGACCTAGCCTTGCTCAGCTCCTACATCCATCTGCGTTATTTGGACCTGTCCTCCAATCATTTGTCAGACTTCTCTCCACTGGCTGGCCTCACTCAGCTGCTGTGGGTGAAGGGAGACAGCAACCTGCTTCAGGGCTTTGAGGGACAGCCTTTCGGTCAGCTCACTTTCCTGCAGTGGCTCAGCATTGCAAGCAATCGGCTGTTTGATGTGAAGGGTCTCGGAGGCCCAGCACTGGAAACCCTCAATCTTACTGGTAATGGCATCCAGACCATGCAGGGCCTGGATCATCCAAATCTGACCAATCTGGTgactctggagctcagaggaaaTTGTTTGGAAACAACAGATGGCATTTACCTGCCCAACTTACGCCATTTGTATCTGGCTCAGAACAATATAAAGAAACTGGAGGGTCTGGAAAAGCTTGAGCGTCTCATCACTCTTCACCTCAGACATAACCAGTTAGAAACACTGGATGGACTCAGTGCCAGTATGAAATGCCTCGAGTATCTTAATGTCAGgggGAACCTTATATCTTCTATGAGGGCTTTGCAGACTCTGGCAAGTGTGGGGCAAACACTAAAGGCACTTGTGCTTTTGGACAACCCTATTGCGAAGACTGACGATTACAGGCTTTATGTGATCTCACAACTTCCCCACCTGGAACGAGTGGACAAAGATCCCGTCACACCTGAAGAAAAATTTGAGGCACAAAAAAAGGAGTTTGAAGATGACAATGCTGAAGATCAAGAGGACGACTGAATAGTCTGTGCCAAAtatgattttatatttaataaagtcTAGACTGGCTGTCCATTTAGTGCATGTGATTTGTAAGGGTGTATAGCTGTTAATGAAAATGAGTAAGACTTATCACTAGATATGATATAACAAGTATCTTTGTAATCTAATGCCAAGGAATAAAACAAGACATCTCAAAAAGGTTTGCAGTCTAATTAAAATCTGTTAAAAAGACACAATTAAGAATGTGAGTATTGGAATATTAAACCATTTCTATGTGTA

Function

GO:

id name namespace
GO:0003355 cilium movement involved in otolith formation biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-041010-153 Acts upstream of or within cilium movement involved in otolith formation. Predicted to be active in cytosol. Is expressed in several structures, including Kupffer's vesicle; forerunner cell group; nervous system; pronephric duct; and spinal cord neural keel. Orthologous to human LRRC23 (leucine rich repeat containing 23).

Ensembl:

ensembl_id ENSDART00000004871

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044025 lncRNA downstream 76514 20014033 ~ 20051369 (-) True XLOC_022298
TCONS_00044026 lncRNA downstream 110951 20014033 ~ 20016932 (-) False XLOC_022298
TCONS_00044730 lncRNA downstream 182461 19944225 ~ 19945422 (-) False XLOC_022295
TCONS_00044731 lncRNA downstream 182584 19944283 ~ 19945299 (-) True XLOC_022295
TCONS_00044729 lncRNA downstream 182825 19944173 ~ 19945058 (-) False XLOC_022295
TCONS_00044990 lncRNA upstream 214465 20348459 ~ 20354924 (-) True XLOC_022307
TCONS_00044991 lncRNA upstream 285139 20419133 ~ 20421216 (-) False XLOC_022310
TCONS_00044992 lncRNA upstream 285139 20419133 ~ 20421573 (-) True XLOC_022310
TCONS_00044993 lncRNA upstream 383615 20517609 ~ 20518851 (-) False XLOC_022312
TCONS_00044050 lncRNA upstream 383702 20517696 ~ 20518184 (-) True XLOC_022312
TCONS_00044028 mRNA downstream 1626 20113378 ~ 20126257 (-) False XLOC_022300
TCONS_00044027 mRNA downstream 27447 20068880 ~ 20100436 (-) True XLOC_022299
TCONS_00044024 mRNA downstream 76514 20014030 ~ 20051369 (-) False XLOC_022298
TCONS_00044022 mRNA downstream 117304 19984808 ~ 20010579 (-) False XLOC_022297
TCONS_00044023 mRNA downstream 125424 19985232 ~ 20002459 (-) True XLOC_022297
TCONS_00044035 mRNA upstream 3526 20137520 ~ 20143211 (-) True XLOC_022302
TCONS_00044036 mRNA upstream 11306 20145300 ~ 20154422 (-) False XLOC_022303
TCONS_00044037 mRNA upstream 12115 20146109 ~ 20175674 (-) False XLOC_022303
TCONS_00044038 mRNA upstream 15237 20149231 ~ 20177527 (-) False XLOC_022303
TCONS_00044039 mRNA upstream 15435 20149429 ~ 20175674 (-) True XLOC_022303
TCONS_00044029 other downstream 1636 20113791 ~ 20126247 (-) False XLOC_022300
TCONS_00044031 other downstream 1672 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044032 other downstream 2885 20122112 ~ 20124998 (-) True XLOC_022300
TCONS_00044030 other downstream 9132 20114060 ~ 20118751 (-) False XLOC_022300
TCONS_00044020 other downstream 219939 19907828 ~ 19907944 (-) True XLOC_022294
TCONS_00044043 other upstream 191704 20325698 ~ 20328622 (-) False XLOC_022305
TCONS_00044044 other upstream 191747 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044058 other upstream 1365591 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044082 other upstream 2509410 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044083 other upstream 2509670 22643664 ~ 22650578 (-) True XLOC_022337

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_06136913_06138676.mRNA True 1029 mRNA 0.47 7 CI01000001 6136859 ~ 6138676 (-)