RNA id: TCONS_00044050


Basic Information

Item Value
RNA id TCONS_00044050
length 489
lncRNA type lincRNA
GC content 0.47
exon number 1
gene id XLOC_022312
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20517609 ~ 20518851 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCTGGTATCTACCCCCGCAGAGAGTCGGATGTATACAGTGCCTCAGTACCTCCAGCGTTGGAGCAGCATGAGTTCGGGTGGTGGCGCTGTACCGCGCTCCTGCGCAACTCACCGGGACTACTTCTGCATGTCAAGAGCTGGGGTTGCAGACTCTGAAGCCATGGTGATTCCCCCACCCCTGAGCCCTGGAGTTATTCCCCTCCTGGTGGTGGATGTAGCACACTCACCCTATGTGTGTTCTACTAGTTTGGGGTGTCATTTGGGCACTCTAAACCCAAAGTGAATGGGCAATCCTGACTGTGAGGGAGGAGACAGATCGGAAATTGATGGCAGTGGATCATGGGATGTGGCATACTGTTTTCCTGTTTCATTGACTGATGAGTGACCTATTTTATAATTCAGCCTCATcaatttgattcattttaaatcCAAAGTATTgtcataaattattttatatcaaTTGGTTAAAATACCTTTTTATAACCAAAA

Function

GO:

id name namespace
GO:0044424 obsolete intracellular part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000153767

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044992 lncRNA downstream 96123 20419133 ~ 20421573 (-) True XLOC_022310
TCONS_00044991 lncRNA downstream 96480 20419133 ~ 20421216 (-) False XLOC_022310
TCONS_00044990 lncRNA downstream 162772 20348459 ~ 20354924 (-) True XLOC_022307
TCONS_00044034 lncRNA downstream 387296 20128117 ~ 20130400 (-) True XLOC_022301
TCONS_00044025 lncRNA downstream 466327 20014033 ~ 20051369 (-) True XLOC_022298
TCONS_00044994 lncRNA upstream 311161 20829345 ~ 20829951 (-) False XLOC_022314
TCONS_00044995 lncRNA upstream 311161 20829345 ~ 20836604 (-) True XLOC_022314
TCONS_00044996 lncRNA upstream 340129 20858313 ~ 20864324 (-) False XLOC_022315
TCONS_00044997 lncRNA upstream 340129 20858313 ~ 20938578 (-) True XLOC_022315
TCONS_00044998 lncRNA upstream 486022 21004206 ~ 21007954 (-) True XLOC_022316
TCONS_00044049 mRNA downstream 87955 20428839 ~ 20429741 (-) True XLOC_022311
TCONS_00044048 mRNA downstream 143300 20373314 ~ 20374396 (-) True XLOC_022309
TCONS_00044047 mRNA downstream 154435 20357377 ~ 20363261 (-) True XLOC_022308
TCONS_00044046 mRNA downstream 155725 20357247 ~ 20361971 (-) False XLOC_022308
TCONS_00044045 mRNA downstream 172223 20340200 ~ 20345473 (-) True XLOC_022306
TCONS_00044051 mRNA upstream 220198 20738382 ~ 20764227 (-) True XLOC_022313
TCONS_00044052 mRNA upstream 601408 21119592 ~ 21215520 (-) False XLOC_022317
TCONS_00044053 mRNA upstream 603807 21121991 ~ 21215311 (-) True XLOC_022317
TCONS_00044054 mRNA upstream 926738 21444922 ~ 21446985 (-) True XLOC_022318
TCONS_00044055 mRNA upstream 934373 21452557 ~ 21453614 (-) True XLOC_022319
TCONS_00044044 other downstream 179099 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044043 other downstream 189074 20325698 ~ 20328622 (-) False XLOC_022305
TCONS_00044031 other downstream 391485 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044032 other downstream 392698 20122112 ~ 20124998 (-) True XLOC_022300
TCONS_00044030 other downstream 398945 20114060 ~ 20118751 (-) False XLOC_022300
TCONS_00044058 other upstream 981401 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044082 other upstream 2125220 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044083 other upstream 2125480 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044084 other upstream 2345273 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044095 other upstream 3630154 24148338 ~ 24167317 (-) False XLOC_022346

Expression Profile

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