XLOC_022311 (taf13)


Basic Information

Item Value
gene id XLOC_022311
gene name taf13
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20428839 ~ 20429741 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00044049
GCTAACCGATTGAATCTCCCTATCCTGGGTCGCGTCAGATGTAAACGAATAAACAGCGTTTCCTGCTGGTTTGTTTGTGTTCTCTGTTGAACTCTACATAATGGCCGAGGAAGAAGATGATCCCGGTTTTGACGAGGATTTGGACGACGGAGGAAACGGGGCAGACTCCGGCCAAGGGAGGAGAAAGCGGCTTTTTTCCAAGGAGCTTCGCTGCATGATGTACGGCTTCGGAGACGACCAGAACCCCTACACCGAATCAGTGGACATCCTAGAGGATCTGGTGATCGAGTTCATCACGGAAATGACACACAAAGCCATGTCCATCGGGCGCCAGGGCCGCGTCCAGGTGGAGGACATTGTCTTTCTCATCAGAAAAGACCCCAGAAAGTTCGCCAGGGTGAAGGACCTGCTCACCATGAACGAGGAGCTGAAGAAGGCTCGAAAAGCCTTCGACGAGGCAAATTATGGCTCTTAAAATTGGCCCTCAGTTGCTAGGCTTTTATTTTGTTCAatcattgttaattttttttacattttaatgctgTTTTGGTTTTCAGTTGCTTGACACTTCAcagtttagttcattttttttcatttgtttgtgcaATAAATGTACATCGTTACACTTTTATCGGAAGATCTTTTTCCAGATTATTTTTTGAAAAGAGCTAACAAGCACTAACTTCTCGAgaataatgaaaattataataCAACACCCGTATATTATCATTAACTGTTTTTGTTATAATCGCATCGTATGTAATTCTAAAGAGTTATTTTACACacttcaaaatgaaaataaaaa

Function

symbol description
taf13 Predicted to enable protein heterodimerization activity. Predicted to be involved in transcription by RNA polymerase II. Predicted to be part of transcription factor TFIID complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TAF13 (TATA-box binding protein associated factor 13).

GO:

id name namespace
GO:0006366 transcription by RNA polymerase II biological_process
GO:0005669 transcription factor TFIID complex cellular_component
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
ko03022 Basal transcription factors
ko03021 Transcription machinery

ZFIN:

id description
ZDB-GENE-030131-2873 Predicted to enable protein heterodimerization activity. Predicted to be involved in transcription by RNA polymerase II. Predicted to be part of transcription factor TFIID complex. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human TAF13 (TATA-box binding protein associated factor 13).

Ensembl:

ensembl_id ENSDARG00000070834

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00044049 True 805 mRNA 0.42 2 20428839 20429741

Neighbor

gene id symbol gene type direction distance location
XLOC_022310 NA coding downstream 7266 20419133 ~ 20421573 (-)
XLOC_022309 CR749762.1 coding downstream 54443 20373314 ~ 20374396 (-)
XLOC_022308 si:rp71-17i16.5 coding downstream 65578 20357247 ~ 20363261 (-)
XLOC_022307 NA coding downstream 73915 20348459 ~ 20354924 (-)
XLOC_022306 si:rp71-17i16.6 coding downstream 83366 20340200 ~ 20345473 (-)
XLOC_022312 NA coding upstream 87868 20517609 ~ 20518851 (-)
XLOC_022313 znf362b coding upstream 308641 20738382 ~ 20764227 (-)
XLOC_022314 NA coding upstream 399604 20829345 ~ 20836604 (-)
XLOC_022315 NA coding upstream 428572 20858313 ~ 20938578 (-)
XLOC_022316 NA coding upstream 574465 21004206 ~ 21007954 (-)
XLOC_022295 NA non-coding downstream 483417 19944173 ~ 19945422 (-)
XLOC_022294 CT574579.1 non-coding downstream 520895 19907828 ~ 19907944 (-)
XLOC_022292 NA non-coding downstream 597100 19822434 ~ 19831739 (-)
XLOC_022324 NA non-coding upstream 1216961 21646702 ~ 21649875 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_06307614_06307988 TAF13, TAF13.S coding CI01000001 null 6307404 ~ 6308353 (-)