RNA id: TCONS_00044996


Basic Information

Item Value
RNA id TCONS_00044996
length 601
lncRNA type antisense_over
GC content 0.45
exon number 2
gene id XLOC_022315
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20858313 ~ 20938578 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CCAGTTTCTTGATACCGGCAGAGGATTTTGGACACGCAGCCATGGGAAACGCGAAGCTGTCTTGAGATCACGCAGGGACGGATGCCGTGACGTAAAATGCACCATGAAGGCTCTCGGGATTCCTCCATATGCCAAGCATGTGATTTTGTCAAGGAGCACCCAGCCACTGCACTGTGAACCCTTGTGTGCCGTCTCCGGCAGGACACCTCCCTACGCTGAGCTCTTTCATGTTTGTGAAGTCTGATGGCGGGACGTGTGTGAGCGTGAAGAGGTCACGACTAGGAAGGTCAGGCTGCATGGGGTGTTTCTTTCTCCCTTAAACCTCAATACACAGAGACTATTAACTCCTCACTACAAACAAACCAGGGGTCACGAGCTGGCAGATCGAAGAAACTGAGCTGACTTGGGATAATTTTTTGTCACCTGATAAGAGCTGATAAGGGCTTGTGACAGATGCTAGATATTGTTATTTGTTTGAGtgtcgataaaaaaaaaaatcagacactatgcatatgtatctatgtatgtactgtatgtatagtgAATGTGTATCACAGTCAACATTTTTTTGTAGTGggtcaaaataaattatatacacaAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044995 lncRNA downstream 21709 20829345 ~ 20836604 (-) True XLOC_022314
TCONS_00044994 lncRNA downstream 28362 20829345 ~ 20829951 (-) False XLOC_022314
TCONS_00044993 lncRNA downstream 339462 20517609 ~ 20518851 (-) False XLOC_022312
TCONS_00044050 lncRNA downstream 340129 20517696 ~ 20518184 (-) True XLOC_022312
TCONS_00044992 lncRNA downstream 436740 20419133 ~ 20421573 (-) True XLOC_022310
TCONS_00044998 lncRNA upstream 139882 21004206 ~ 21007954 (-) True XLOC_022316
TCONS_00044999 lncRNA upstream 782378 21646702 ~ 21649875 (-) True XLOC_022324
TCONS_00045000 lncRNA upstream 789950 21654274 ~ 21695061 (-) True XLOC_022325
TCONS_00044064 lncRNA upstream 819452 21683776 ~ 21692423 (-) True XLOC_022326
TCONS_00044733 lncRNA upstream 1275453 22139777 ~ 22151790 (-) True XLOC_022332
TCONS_00044051 mRNA downstream 94086 20738382 ~ 20764227 (-) True XLOC_022313
TCONS_00044049 mRNA downstream 428572 20428839 ~ 20429741 (-) True XLOC_022311
TCONS_00044048 mRNA downstream 483917 20373314 ~ 20374396 (-) True XLOC_022309
TCONS_00044047 mRNA downstream 495052 20357377 ~ 20363261 (-) True XLOC_022308
TCONS_00044046 mRNA downstream 496342 20357247 ~ 20361971 (-) False XLOC_022308
TCONS_00044052 mRNA upstream 255268 21119592 ~ 21215520 (-) False XLOC_022317
TCONS_00044053 mRNA upstream 257667 21121991 ~ 21215311 (-) True XLOC_022317
TCONS_00044054 mRNA upstream 580598 21444922 ~ 21446985 (-) True XLOC_022318
TCONS_00044055 mRNA upstream 588233 21452557 ~ 21453614 (-) True XLOC_022319
TCONS_00044056 mRNA upstream 597697 21462021 ~ 21463788 (-) True XLOC_022320
TCONS_00044044 other downstream 519716 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044043 other downstream 529691 20325698 ~ 20328622 (-) False XLOC_022305
TCONS_00044031 other downstream 732102 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044032 other downstream 733315 20122112 ~ 20124998 (-) True XLOC_022300
TCONS_00044030 other downstream 739562 20114060 ~ 20118751 (-) False XLOC_022300
TCONS_00044058 other upstream 635261 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044082 other upstream 1779080 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044083 other upstream 1779340 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044084 other upstream 1999133 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044095 other upstream 3284014 24148338 ~ 24167317 (-) False XLOC_022346

Expression Profile

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