RNA id: TCONS_00044992


Basic Information

Item Value
RNA id TCONS_00044992
length 2334
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id XLOC_022310
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20419133 ~ 20421573 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGAAATTGAATTTTAAAATGGTGAGAGGCGAGAGCGTTCTACACCTCTCCCATTTTAGTCAAGCCAAGAAACCCTAAACCGCCTGGGAAGGTGCTGTGTTGCAAATCTTCCCTGTGCCCTGAATAGCAGTCGGTTTAGATCTCCACCCAGAACTCAACAACACAAATGGAGACACAGGTACCCCAAATCCCAAAGAGCATAAACCCCAGTTTCCATCTAAGGCATGCACTTCCTGAGCTAGGAATCATGAGGACGTTTGAGAAGGAGGAGGTTACAGACCCTATACTTTCCAGCAGAAATGGAGTGATTTAAAAGGCGAGCAGAGAAGTTGAGAAATCATTGCATCTACAGAAGTGGCATGAGATTACACCTCCAACAGTACTGTATGACCTGAAGGATCAACTGGCGTTTCCCGCAGTAAGAAGAAAACCTGAGGGAAATCTGACCTTTTGCCTCTAACCTCAACTTATATAACTAGCATACTACAGGCAATGGTCTTTGGGATTTAAAATTGATCTTTTTCATGACCTTTCTTGACCTTCCTTCTAAAGTATGAAAAGAAGAGACCAAGGCAAATTCAAACGACAACACTACGGATCTGCTGGACGCTCAAAGTGTTGTCTATTTTGGACCAGGGCAACTGGAAACCATGATGGCGGGCTGATCTTGTTTTTCTGATGGGGAGTAGTGAAAGTATTGGCGGGGTGTGTCAGAAGATCACATGAGTCTCAGTATTAACTTCTAGAACTGAGATATTTGGCTTCATAACAACCACTTTTAGGTTTtctacttttaaaatataaaaaaagcgcTGAAATCACACAATACTATTTTGGATAATAAAATCAAAGCAAAATATTCCCAAAATATAGAAGCATATAGGTCAAAAGTGCCTTTTTAATCAATTTGCAAAGATACAGTTGGAAAAATAAGAGGTTTCCTATCACCATGACAACACAGCATGAAGTCTGCGTCTGAGGTAAATACTGTAGCAGGGTTATTTTAAAACAGCAAAGGGTGAGGGGACGTGGCCAGAGGGCTGGAGAATGTCTGGGGAAGAAGCAGGTGTAGTGGGGGACAGCTGAGTGAGGGGTAAGTGGTTTCCTTTTAAAAAGGTTTGGATGGTTATTTATAGGCGCCATCACAGTGCGGTCCTTGAGGAACAACGGCAAGAAGATGCTCTTGAACATCTTGACTGCTTTCAGTTGCCGCTGGAGGGGATGAAATGGAATTTTTCTTACTGCACGTTCTCCATCATTTTGAGAAACTCTgcaataaaaatggaaaaaagggaTGATATGTTGAACAAATTCATTTGTATGGGATAAAATATTGCACAAATTAATTTCCTTAAGCATCTCAAACATGGTATTATAATATCTGGAGGTCAGGAAAATCCCATGGacacatatgtatttatatttaaatatactttaacattaaaaaataaaaatggacaaaGAACTTTAACATCTATGGAACCGTTCCAGTGCAAAAGGTCTTTAAAGAAAGGCTGAAAAATGGTTCTTTAAaagttttgtctgttttttatttttattttctgaggGAGACACAGAAAAACTGAATAACATTTACCATCAAAGTCAATTTTTCCATCTTTGTTTGTGTCTGCATCGGCCATGAGCTCATCTATGTCTTCCTCTGCCACAGGCTCACCAGTGGCATGCAAGATATCCCCAAACTCCTCACGATCAATGAAACCATCTTGGTTCCTGTTGTAAACAAAtgatatttaattacattattgtTGTTGATTTAGTTGTCAAGCTATGTCACCTGTCTTGTTATAtctagatgtgtttttttttaaaaataaattgatgacCAATTACACACACATGAATCCTTATAATAATACTTACActatcggtcaaaagtttggggtcttttttttatttttattaattttatctttttttttattgaacatttaatTGTGAACAAAGCCCGAGATCCACCCAACAAAATatgtaagataaaaataaaagctgcaaatataaactgcttactaacatctgttaatgtagagttaatacttaacagataaggaattcactatttgctaatgcttaataaatgatttgtagTGTGCAGTTATTACAAAGTGTTACAGAGTTTTCTAATAATGCTGTCACAATTAGCTAAAGCGCATAAGATTATAggtgttggtaacactttagttcacaagttacagtattaacaaaccattaacaaaCACTAGTAGCTTaaaaaaactactaattagctgtttattaatagtaggGTAGTAGtttggtttaggtttggggtagaaTTAAGGATGCAGAATACaa

Function

GO:

id name namespace
GO:0044087 regulation of cellular component biogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0090257 regulation of muscle system process biological_process
GO:0050879 multicellular organismal movement biological_process
GO:0050881 musculoskeletal movement biological_process
GO:0014819 regulation of skeletal muscle contraction biological_process
GO:0051146 striated muscle cell differentiation biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0006936 muscle contraction biological_process
GO:0006937 regulation of muscle contraction biological_process
GO:0006941 striated muscle contraction biological_process
GO:0010927 cellular component assembly involved in morphogenesis biological_process
GO:1902903 regulation of supramolecular fiber organization biological_process
GO:0055001 muscle cell development biological_process
GO:0055002 striated muscle cell development biological_process
GO:0031032 actomyosin structure organization biological_process
GO:0043062 extracellular structure organization biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0016203 muscle attachment biological_process
GO:0097435 supramolecular fiber organization biological_process
GO:0030239 myofibril assembly biological_process
GO:0050746 regulation of lipoprotein metabolic process biological_process
GO:0050748 negative regulation of lipoprotein metabolic process biological_process
GO:0006500 N-terminal protein palmitoylation biological_process
GO:0060254 regulation of N-terminal protein palmitoylation biological_process
GO:0060262 negative regulation of N-terminal protein palmitoylation biological_process
GO:0003008 system process biological_process
GO:0003009 skeletal muscle contraction biological_process
GO:0003012 muscle system process biological_process
GO:0030029 actin filament-based process biological_process
GO:0003015 heart process biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0110053 regulation of actin filament organization biological_process
GO:1903059 regulation of protein lipidation biological_process
GO:1903060 negative regulation of protein lipidation biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0060047 heart contraction biological_process
GO:0016043 cellular component organization biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0044421 obsolete extracellular region part cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044430 obsolete cytoskeletal part cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0031012 extracellular matrix cellular_component
GO:0062023 collagen-containing extracellular matrix cellular_component
GO:0036379 myofilament cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005861 troponin complex cellular_component
GO:0005576 extracellular region cellular_component
GO:0005865 striated muscle thin filament cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031672 A band cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0030018 Z disc cellular_component
GO:0031430 M band cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0048306 calcium-dependent protein binding molecular_function
GO:0051015 actin filament binding molecular_function
GO:0003779 actin binding molecular_function
GO:0044877 protein-containing complex binding molecular_function
GO:0008092 cytoskeletal protein binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044990 lncRNA downstream 64209 20348459 ~ 20354924 (-) True XLOC_022307
TCONS_00044034 lncRNA downstream 288733 20128117 ~ 20130400 (-) True XLOC_022301
TCONS_00044025 lncRNA downstream 367764 20014033 ~ 20051369 (-) True XLOC_022298
TCONS_00044026 lncRNA downstream 402201 20014033 ~ 20016932 (-) False XLOC_022298
TCONS_00044731 lncRNA downstream 473834 19944283 ~ 19945299 (-) True XLOC_022295
TCONS_00044993 lncRNA upstream 96036 20517609 ~ 20518851 (-) False XLOC_022312
TCONS_00044050 lncRNA upstream 96123 20517696 ~ 20518184 (-) True XLOC_022312
TCONS_00044994 lncRNA upstream 407772 20829345 ~ 20829951 (-) False XLOC_022314
TCONS_00044995 lncRNA upstream 407772 20829345 ~ 20836604 (-) True XLOC_022314
TCONS_00044996 lncRNA upstream 436740 20858313 ~ 20864324 (-) False XLOC_022315
TCONS_00044048 mRNA downstream 44737 20373314 ~ 20374396 (-) True XLOC_022309
TCONS_00044047 mRNA downstream 55872 20357377 ~ 20363261 (-) True XLOC_022308
TCONS_00044046 mRNA downstream 57162 20357247 ~ 20361971 (-) False XLOC_022308
TCONS_00044045 mRNA downstream 73660 20340200 ~ 20345473 (-) True XLOC_022306
TCONS_00044042 mRNA downstream 93402 20263124 ~ 20325731 (-) False XLOC_022305
TCONS_00044049 mRNA upstream 7266 20428839 ~ 20429741 (-) True XLOC_022311
TCONS_00044051 mRNA upstream 316809 20738382 ~ 20764227 (-) True XLOC_022313
TCONS_00044052 mRNA upstream 698019 21119592 ~ 21215520 (-) False XLOC_022317
TCONS_00044053 mRNA upstream 700418 21121991 ~ 21215311 (-) True XLOC_022317
TCONS_00044054 mRNA upstream 1023349 21444922 ~ 21446985 (-) True XLOC_022318
TCONS_00044044 other downstream 80536 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044043 other downstream 90511 20325698 ~ 20328622 (-) False XLOC_022305
TCONS_00044031 other downstream 292922 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044032 other downstream 294135 20122112 ~ 20124998 (-) True XLOC_022300
TCONS_00044030 other downstream 300382 20114060 ~ 20118751 (-) False XLOC_022300
TCONS_00044058 other upstream 1078012 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044082 other upstream 2221831 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044083 other upstream 2222091 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044084 other upstream 2441884 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044095 other upstream 3726765 24148338 ~ 24167317 (-) False XLOC_022346

Expression Profile

//