RNA id: TCONS_00044025


Basic Information

Item Value
RNA id TCONS_00044025
length 2968
lncRNA type retained_intron
GC content 0.41
exon number 7
gene id XLOC_022298
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 20014030 ~ 20051369 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAAGCAGTCCAGCTGTCCTCTCCTCTCCTCCTCGCTGACTGATACAGGCGGATGACCCGCAGGAGTTTGTCAAGATAGTTCACACTAGGACTCGGACACTAAAAGTCACGCCGGTCTGAATATATATAATCTGAAGATCAAGTAACAAAATCTGAAGATAATAAATACGGTCGCAGAAGCTCATAGTGTGGAAATATTGAAGCCCGAAATAAGGTCAGTGTGTGTAAGTCTGTGTATGTCAGTGATGTTCTCCTGCCGCTCTCTCCTGCTGCTGCTACTCAGTGTCTGCAGCCTCACTGCTCCCTCAATGGCTCTGCCCTTTGAGCAGAGAGGATTCTGGGACTTTGCAATGGACGGAGAAGCAGGAGATTCGACAACAGTAATGATGAGAGATGAAGAGGGTTCAGCTTCGGAGGAACTGCCACCAGATGTGTTTATATGTCCCTTTGGATGCCATTGTCAAGTCAACatagtgcaatgttcagacctaAGTTTAATCGCAGTGCCCAAGGAGATTCCCAGAGACACCAAACTCCTGGACCTACAGAACAACTGCATCACAGAACTGAAGGAGAACGACTTCAAAGGGCTCACAAACCTCTACGCCCTGTCACTGGTCAACAACAAGATCTCCAAAGTCCACCCACGAGTCTTCACACCCCTCCGACATCTGAAAAAGCTTTATTTTTCCCATAACCTCCTGACAGTGGTACCCAAAAACCTTCCCCCATCTCTGGTGGAGCTGCGCATTCATGACAACCGTATTAAGAAGGTTGCAGAAGGAACGTTTTCTGGTCTGGGCAGCATGAACTGCATTGGTTTGTATGCACGCTCGCCATTATGTGGTATAGAGGTTACAATCTGACCAAACCATTTCCTTTTTTAGATGGAGCCTGCTGGTTTTTGTGATGGGATATTCTGTCTGATGTTGAATGCTTCTTATAGAGATGGGCGGAAACCCTATTCAGAACAGTGGCTTTGAGCCTGGCGCTTTTAAAGGCCTGAAACTCAACTACCTGCGCGTCTCTGAGGCCAAACTCACTGGAATACCGAAAGATCTCCCTGACAGTCTTCATGAGCTCCACTTGGACAACAACCAGATCCAAGCCATTGAACTGGAGGACTTGAGACGCTACAAACACCTGTACAGATTGGGTCTGGGTTTCAACCAGATCCGCATGATTGAGAATGGCAGCCTATCATACGTCTCTAATCTGAGGGAGTTGCATTTGGAAAACAACCGTCTGACCCGCGTCCCGAAGGGCCTGCCAGACATGAAGTACCTGCAGGTGGCTTACCTTCATTCCAACAACATCAGTCAAGTGGATGTCAATGACTTCTGCCCTCAAGGTTTTGGCATGAAAAGGAACTTCTACCATGGCATCAGCCTCTACGGAAACCCGGTGAACTATTGGGAAGTGCAGCCTGCCACCTTCCGCTGTGTTGCTGACCGACTGGCCATTCAGTTTGGAAACTATAAAAAATAGAGGATGAttgatttgtgaataaatattaatGCTGGAATTGAAATAAATCAGACACAAATTAGTATGAGGACCAAAACCGTGTCAACAAAGAGATTTCACATAGTTTTTACCAAGGCTTTTCTCTTGAACTAGTATGTATAGTTCCCTCAGAATTAAaactttgtcatcatttactcattcgcTTGAACACaatgaagatatttagaaaaatgttggaagccAGTAACAACTGACTTCCATTCTATTTGTTTTCCtgctatagaagtcagtggttactagTTTCTAtaattcaaaatatcatcttttgtgtctAACAGAAAAGAGAAACTCATACATttttggaaccatttgagggagattaaataatgagtaaattgtCTTTTTTCaagtaaactatctctttaacccTGTGTTAAATTTAATCCTGGGTATAGCTTTCACACTGTATAATTTGAAACCCCCAGGTTAACATCCTTGCAGGCATACAGTATTAGCATTCACTGACTGGATGAATGGAACATGCAATTCGCTTACATGAAGGGAGAGAAATATTCCTCTTGTGATTTACAATCAGACTTGGCACTGCTTTTTATCCTGGATTATGAGACGGTGCAGCATCAGCGCCTCTTTTGTGCTGTTAACCCTGCATTGCGGAGCTTTAAAACAATGCAgtattaaaatgttttgtctCGAAACAACCGGCAGCCAAACATGTGTCTCATTTAACAGTGATTTggacaatatacagtatattcagcTTTTGTGCTTAATTTTTCCAGTCAAAGAGTACCGCAAATATGGAGGCCAAAAGATTTGCAAGTGTACTTATTTGAAAATAAAGAGACCAACAGTTTAATTAATCTTTTCTATGACAcgaaacactatatatatatattagaaaataaatgGTATTTTGACAAACCATTGACTGAAAGGTCCTTTGGGAAACCAATGATGACATTGTTGCATAaatcaacttcattcattcatttttttaaagctttgtCCCTGatttaccaggggtcgccacagtggaaagaaccacAAAACCTAACTTTAAGAATATTTTTGAGAAGTATTATTTTCAGGACAGTGCAGTTTGAATCGTCATATAAATAATCGGGATTTAATATTATCTTAAGGTTTATTATAACAGTGTGAAAAGTGAAGCAAGATAAATAAGTTTTTTCTTGACCCGGGGTTTACATATATCCAGGGTTAACTAGTTCAAGTGTAAAAAGCCTTAATGTGGGATTGAGAGTGCAAAAGTGATGCTAGGACTAATCCATTGCAGAGTTTAATAATTTCAGGTAAAAAGCAGTGCTCACCTGCTTCTAAATTACTTGTGAAATGTTTATTTACCAAGGGTTTAAAGTATGGTGATTAGAATGACAATAAACCGATGCTAAGCACAGTGTGAAAAGCATTGTGTACCTTtagaattttgtatttttaaggctacaaaaaaaaaaaaaaaaa

Function

GO:

id name namespace
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-21 Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in several structures, including alar plate midbrain region; central nervous system; neurons; pectoral fin; and pectoral fin bud. Human ortholog(s) of this gene implicated in Meester-Loeys syndrome and X-linked spondyloepimetaphyseal dysplasia. Orthologous to human BGN (biglycan).

Ensembl:

ensembl_id ENSDART00000145464

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044728 lncRNA downstream 60944 19933902 ~ 19953089 (-) True XLOC_022293
TCONS_00044730 lncRNA downstream 68611 19944225 ~ 19945422 (-) False XLOC_022295
TCONS_00044731 lncRNA downstream 68734 19944283 ~ 19945299 (-) True XLOC_022295
TCONS_00044729 lncRNA downstream 68975 19944173 ~ 19945058 (-) False XLOC_022295
TCONS_00044732 lncRNA downstream 69097 19944173 ~ 19944936 (-) False XLOC_022295
TCONS_00044034 lncRNA upstream 76748 20128117 ~ 20130400 (-) True XLOC_022301
TCONS_00044990 lncRNA upstream 297090 20348459 ~ 20354924 (-) True XLOC_022307
TCONS_00044991 lncRNA upstream 367764 20419133 ~ 20421216 (-) False XLOC_022310
TCONS_00044992 lncRNA upstream 367764 20419133 ~ 20421573 (-) True XLOC_022310
TCONS_00044993 lncRNA upstream 466240 20517609 ~ 20518851 (-) False XLOC_022312
TCONS_00044022 mRNA downstream 3454 19984808 ~ 20010579 (-) False XLOC_022297
TCONS_00044023 mRNA downstream 11574 19985232 ~ 20002459 (-) True XLOC_022297
TCONS_00044021 mRNA downstream 36819 19968956 ~ 19977214 (-) True XLOC_022296
TCONS_00044017 mRNA downstream 60944 19834215 ~ 19953089 (-) False XLOC_022293
TCONS_00044018 mRNA downstream 80408 19838130 ~ 19933625 (-) False XLOC_022293
TCONS_00044027 mRNA upstream 17511 20068880 ~ 20100436 (-) True XLOC_022299
TCONS_00044028 mRNA upstream 62009 20113378 ~ 20126257 (-) False XLOC_022300
TCONS_00044033 mRNA upstream 76514 20127883 ~ 20133994 (-) False XLOC_022301
TCONS_00044035 mRNA upstream 86151 20137520 ~ 20143211 (-) True XLOC_022302
TCONS_00044036 mRNA upstream 93931 20145300 ~ 20154422 (-) False XLOC_022303
TCONS_00044020 other downstream 106089 19907828 ~ 19907944 (-) True XLOC_022294
TCONS_00044019 other downstream 130479 19879545 ~ 19883554 (-) False XLOC_022293
TCONS_00044016 other downstream 182393 19827733 ~ 19831640 (-) True XLOC_022292
TCONS_00044012 other downstream 188835 19822434 ~ 19825198 (-) False XLOC_022292
TCONS_00044009 other downstream 300805 19713095 ~ 19713228 (-) True XLOC_022291
TCONS_00044029 other upstream 62422 20113791 ~ 20126247 (-) False XLOC_022300
TCONS_00044030 other upstream 62691 20114060 ~ 20118751 (-) False XLOC_022300
TCONS_00044031 other upstream 69634 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044032 other upstream 70743 20122112 ~ 20124998 (-) True XLOC_022300
TCONS_00044043 other upstream 274329 20325698 ~ 20328622 (-) False XLOC_022305

Expression Profile

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