RNA id: TCONS_00044059


Basic Information

Item Value
RNA id TCONS_00044059
length 1958
RNA type mRNA
GC content 0.48
exon number 18
gene id XLOC_022322
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21499585 ~ 21515182 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acaTCCTGCATCGGAAGCCACTTCAACCAGCAGAAGCTCTTGGACAGGACAAGATGTCCGGAGAGATCTTTTACTCTGTGGATAATCTCTATGACCTGGACAGTGCCAACTGCCATCCTCTAGTGTGCCACTTGTGCCAAGAGCAATACGAGCATCCATGTTTACTGGACTGTTATCACACGTTCTGTGCCAGTTGCCTGCGTGGAAGAGTCGCGGACAGCCGTCTGACTTGCCCTGTATGTGGACATCAGTCTGTTGTAAAAGGAATCAATGCACTCCCTCCTGAGGATCGACTACTAAAGTTTCTGGTGGACAGTTCAGCGGACAGCGAGGAAACTGTGCAGTGTGCAAACTGTGATTTGGAGTGCAAGAAACAGGATGTGGATGCAATGTATTATTGCAACACTTGTTGCCAGCCACTGTGTCGAGACTGCAGGGAAACCACCCATAAAGCCAAGATGTTTTCCCGCCACGAGATCGTCTCCTTGGCAAAACGTACCAAAGAAGCCCACAAAAAATGTGCCCTCCATGAGGAATTCTACATCATGTTTTCTACAGAGAAAAAGTCCATGCTCTGCATCAACTGCTTCAGAGACATGCAAGTGGAAAGCAGAGCACACTGCATTGATATTGAGACAGCATATATACAAGGCTGTGAAAAACTGGACCAAGCCGTCTTAGCAGTGAAGGAGCTTCAGATGTCAGCGCGAGAGGCCATTATTCTGCTCAAAGCCATGATTGGAGAGGTCAGAGCCAATGTGGATGAAGAAGAGAGCGCCATCTGCACACTTTTCAGTAACATGCAGGAAAAACTagcagaaagaaaaaagattCTACTGAAGGCAGCACGGAGTCAGCATGAAGAGAAGGAGAGAACCTTTAAAGAGCAATTATCTCATCTTGCTGCACTCCTGCCAACTCTCCAGgTTCATCTTGTTACATGCTCTGCCTTCCTAAGCTCAGCAAATAAGTTTGAGTTCTTAGACATGGGATATCAATTAATGGAGAGACTAAAGAAGATTGTGAAACTACCACACAGGTTGAGACCAACACAGAGCAGTAAGATCAACACAGAGTATCGCTCTGAATTTGCTCGCTGCCTAGAGCCGCTGCTGCTGTTGGGTCAACGGCGCTCAATGTCTACCACAGGGAGCGTGGCTTTAGCTTTGGGAAATGCCAGTGGACTGATGCAGTCATCTCTTTCAGTGCAGTGTCACTCTCCTGCTATGAGTGACATGTCGCTGTGCTCATCGGTGGTGCGCAGGCCGACCTCACACCGCTACATCAGCACCAAGGTTTTGCTGGCCAAGGGTGGAGAGACGCCGTTTATGGAGCACTGCTGCAACTATGAGAACAGCTACAGGACTTTACAGACAGAGATCCAGAAGCTGAAAGACCAGGTGCAGGAGATTCACAGAGACCTGACCAAGCACCACTCCCTCACCAAACCTGACAGCATGAGTGAGATTTTGGAGAAGTCAGTACAGGTGGACAGTCAGATCTCCTCCGAGTATGCTTCAGTGGAGCTCATGCGGGCCATGTTCGAGGAGATCTGGGAGGAGACTTTACAGAGAGTGGCAAATGAACAGGAGATTTATGAAGCGCAACTTCATGATCTGCTTCAGTTAAAACAGGAGAATTCCTATTTGACAACAATCTCCCGACAAATAGGTCCCTACATCCGCTCTATAGCAAAAGTGAAGGAACGTCTGGAGCCAAGGCTGAAGGAGCCTAAAGAACTCAAGGATGATCGCACAGAGATCATGTTGAAGCTCTATGAGGACAGCACGTCTACAGCTGACACACAGCCAAGTAATGAGCTATCCTGCAACACTGAAGACAACTGGACTCTAAACAGCCTATCAGAAGAGACCAATCCTAAAAACAAGGATTACTACAGGACAAACAAGCAAAAGAACACCACAGATTCAACCAATCGCAAAGAGATTCCAATGTGA

Function

GO:

id name namespace
GO:1903954 positive regulation of voltage-gated potassium channel activity involved in atrial cardiac muscle cell action potential repolarization biological_process
GO:1903762 positive regulation of voltage-gated potassium channel activity involved in ventricular cardiac muscle cell action potential repolarization biological_process
GO:0086019 cell-cell signaling involved in cardiac conduction biological_process
GO:1901207 regulation of heart looping biological_process
GO:0005737 cytoplasm cellular_component
GO:0046872 metal ion binding molecular_function
GO:0030544 Hsp70 protein binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-080227-9 Predicted to enable Hsp70 protein binding activity and zinc ion binding activity. Involved in positive regulation of voltage-gated potassium channel activity; regulation of heart contraction; and regulation of heart looping. Predicted to be located in cytoplasm. Orthologous to human RNF207 (ring finger protein 207).

Ensembl:

ensembl_id ENSDART00000142000

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044998 lncRNA downstream 492264 21004206 ~ 21007954 (-) True XLOC_022316
TCONS_00044997 lncRNA downstream 561640 20858313 ~ 20938578 (-) True XLOC_022315
TCONS_00044996 lncRNA downstream 635894 20858313 ~ 20864324 (-) False XLOC_022315
TCONS_00044995 lncRNA downstream 663614 20829345 ~ 20836604 (-) True XLOC_022314
TCONS_00044994 lncRNA downstream 670267 20829345 ~ 20829951 (-) False XLOC_022314
TCONS_00044999 lncRNA upstream 131520 21646702 ~ 21649875 (-) True XLOC_022324
TCONS_00045000 lncRNA upstream 139092 21654274 ~ 21695061 (-) True XLOC_022325
TCONS_00044064 lncRNA upstream 168594 21683776 ~ 21692423 (-) True XLOC_022326
TCONS_00044733 lncRNA upstream 624595 22139777 ~ 22151790 (-) True XLOC_022332
TCONS_00045001 lncRNA upstream 696943 22212125 ~ 22216128 (-) True XLOC_022333
TCONS_00044057 mRNA downstream 29196 21469203 ~ 21471022 (-) True XLOC_022321
TCONS_00044056 mRNA downstream 36430 21462021 ~ 21463788 (-) True XLOC_022320
TCONS_00044055 mRNA downstream 46604 21452557 ~ 21453614 (-) True XLOC_022319
TCONS_00044054 mRNA downstream 53233 21444922 ~ 21446985 (-) True XLOC_022318
TCONS_00044052 mRNA downstream 284698 21119592 ~ 21215520 (-) False XLOC_022317
TCONS_00044060 mRNA upstream 5587 21520769 ~ 21533949 (-) False XLOC_022323
TCONS_00044061 mRNA upstream 6324 21521506 ~ 21535040 (-) False XLOC_022323
TCONS_00044062 mRNA upstream 11479 21526661 ~ 21534738 (-) False XLOC_022323
TCONS_00044063 mRNA upstream 11499 21526681 ~ 21534455 (-) True XLOC_022323
TCONS_00044065 mRNA upstream 181378 21696560 ~ 21748805 (-) False XLOC_022327
TCONS_00044044 other downstream 1161621 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044043 other downstream 1171596 20325698 ~ 20328622 (-) False XLOC_022305
TCONS_00044031 other downstream 1374007 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044032 other downstream 1375220 20122112 ~ 20124998 (-) True XLOC_022300
TCONS_00044030 other downstream 1381467 20114060 ~ 20118751 (-) False XLOC_022300
TCONS_00044082 other upstream 1128222 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044083 other upstream 1128482 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044084 other upstream 1348275 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044095 other upstream 2633156 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044112 other upstream 2928000 24443182 ~ 24444254 (-) False XLOC_022355

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_06965170_06976281.mRNA True 2002 mRNA 0.48 17 CI01000001 6965071 ~ 6976281 (-)
bowfin (Amia calva) AMCG00002185 True 5934 mRNA 0.53 19 CM030136.1 6357657 ~ 6381431 (-)