RNA id: TCONS_00044065


Basic Information

Item Value
RNA id TCONS_00044065
length 6932
RNA type mRNA
GC content 0.50
exon number 44
gene id XLOC_022327
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21696560 ~ 21763598 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGACCATGTGTGTCTGCTGGACTGTATAGCACTTGACCTTCAAGAGATGGACATTTTTGCTGCAGAGCGGTTGCCCTGTGAGCCCTGGGACAGTGCTGGAAAGCATCTAGAAACAGATTTGGTATTCCCATCCTACTCAGTGCGTAGAAGTGGGGAGAGCCTGTTAAAGGAGCGCTGCCATCTGAAGCTGAAAGTGGAGCGCAACCTGGACAAGGAATTAAGTCATGCTGTCCCAGACATGTCCATTCACGGCAGCCTGTCTTCTGTCCACTGCTCGTTGGACCTGAAGAGGTATCAGATGATCCGTGGACTCTTGGAGCACAATCTGGGAGAGCCTGTGGAGGAGTTTCTCAGACCTTATAATCTTCAGGACCCCAGCTCATATACCGTTTTGAGTGGTGATGTGTTCACATCCCTGTCTCTTCTGGTGGACATGAAGGACGTCAGTCTCGAGTTACTGGACAACCATAAATCCACAGGTCATAACTGCTCCTTGGCAAGGTTTGACTTTATGAAATCAAAGCTCCTGTTTGAGAGTTTCTCTAATGGTTCAAAGTCTGTGAACCTGGTCTCCCATTCACTCCTGGCCCACGACACTCGACTAACTGGCAGCAGTGCCCCTACAGAAGGGAAGCACAATGTGTTTGATTGCATTCTGCAGCCATCCAGGACTGGCACCAACCGAGCCTCGCTGCAGCTAGAGCTACATTACAGATCAACACGGGACTCTTCATGCTTCACAGTGGTTTTAAACAATCTGCGAGTGTTCCtcatttttgattggctacagctGGTCCAGGACTTTCTGCACATGCCTGTGGAAAAAGGTACAGCGCCAACACACCAGCGCTGGCCAAGTGGCAGCAGTGACCAAGGTTGCACAGGAGCCGTCATGCCCAAAACTGTCAAGAGTGGCGTGGTCACCAAGCGATCCACTGTGCCGGTCACTCAAGATAAACAGCTGGAGGTCAAAATCAATGTGACGGGGACAGAGTTTGTGGTGGTTGAAGATTCTTCCTGTTTAGACACCAACGCTATCATTCTGAAAGGCACCACTGTGCTCACATACAAGCCTCGACTTCTTGACAGGCCTTTCTCTGGCAGCTTAGCAGGCATTGAGGTTTTCTCCTGTCGATTGGGGAGCGAGCAGGAAACCGCTTTGTCTATCATCGATCCTGTCAATGTCCAAATGGAGCTCTGTGGAAGCCCAACGTACCAAAGCAGTTCAGGCCTCCTTGATGCCTTCAACATAGAGGACTTTCCACCTCTCTTGGAGATCCAATTTCCTGCTCTAGACATCCGTCTTTCCTACAATGATGTGCAGCTATTCTTGGCAATAGCTAAGTCCATTCCCACTGCAGCATCCGCCAACCCTTCAGACACTGCCGTAGACGCGGAGAGTTCAGCATCCACTGCCAGTACTGACACTCCATCCAAAACAAAGGATAGCTTCCGGCAAAAGACAGAGGCTTTACTGGaaGGTCAGCTTACTCGATTGCAGGACCTTGGGTTCAGGAAGGAAGACTGCAGACGGGCACTTATTCACTGTAGAGGTCAGTTGGATCAGGCTGCCACATGGTTATGGGAGAATGCAGAGAGCATGTCGGGCAGAAGCCGAACCAACTCAGGCTCCAGCAGCCACTCTGCTCCTCCTCTGTCTGGAGTAGAAGTGAAGGCCGAGAATGTGTGTATCTGTTTTATCGATGACTGTCTGGACTGTGACGTCCCTCTGGCAGAGATCACCTTCTCACGTCTTTATGTTCTCCAGAGGATTGGCTCTATGCAGGAAGGCAAGGCTAGTTTCACATTGTCTGGAGATTATTACAACAGGGAACTCTCAGGCTGGGAGCCATTCATCGAGCCTTGGCCGTGTTTCCTGGATTGGCAGCGACAGGCGGCAGGCCGGCTCCATCCTCCGCGCCTGAAGATCGGTGTTCGAGCCAAGCAGAGGCTGGATGTCAACATCACCTCTGTCTTACTCGAGCAGTACAGCACCACCAAGACTTCGTGGTTAGCAGATTACTGTAAGGAAGACGAGCAGTCGCCACAGCCCTCTGCCGCTCTATCTTGGATGGGCTCTTCAGTGGATCCTCCTTCCTTTGGCCAAAGTCTTCCTCTTGCCTACCTTAGAACTAGAAGCTCTACCAGCTTGACTTGTCTCGAGCAGCAGATTCATGCCCGAGCGGATATGAAGCTATCTAAGAGGAGGCAGCCGTTTGTGCCCTATGCTTTACGCAATCATACCGGCTGCACCATGTGGTTTGCTACTCTCACTACCACACCAACCAGAGTGGCGCTGTCCCACAGCAGTAGTGCTGACTCTATATCTGAAGTTCATGGGCCTGGGACAGATGATACACACAACATCAGCCAATGGAGAGAGGTGCTGCCAGGAGAGGAGATCCCGTTTGAGTTTGAGGCCCGTGAGAAACTTCGGCACAGACACACCCATGAGCTGAAGCTCCACCAACTGCTAGTACGTGTTGTGGGCTGGGAGCAGGTAAAGCCTGTGTCTGTTGACAAAGTTGGGGTTTTCTTCCGCTACGCTGCCCCAGATCGAAACAACCCCTCGAGCACAGTTGGCAGTCCAATTAGCAGAACCAACATCATACACCCGCATGTATATTTCTCAGCTTTGCCGCCTGTTCGAGTAGTTTTCTCCATCACTATGGAGGGCAGCGCTCGTAAGGTCATTACAGTGCAGTCTGCGCTCACAGTGAAGAATCGCCTTGAGGTTCCCATGGAAGTGCGACTAGACAGCCCTTCGGCTCCAGACAAGCCCGTAGTCCTGCCACCAATCCTGCCTGGAGAAGCTTTAGCCATCCCTCTCCATCTAACATCTTGGAGGCTTCAGGCGAGACCTAAAGGCTTGGGGCTATTCTTCTGTAAGGTGCCAATCCATTGGACAAGCGTGGAGCGACCTGGGGAGGTCAGCAGCAGCAAAAGAGAATGTCAGTCAGCAGATTTTGATGAACAACTCAAACGCAGCTTCAGGTTCTGTGTTGTCATTAAGAAAGAGAACTACCCTGAACAGCAGCCTGCTAAAACTGTGGCGGGAGGTGGCACTAAGCAGATCTACCGCCAGCCAGGTCACACCATCTTTCTGCTGCCCACCCTAGTGCTGGCCAATCTTCTTCCTTGTGACCTCAACTACTATATCAAAGGCACTTCAATCAAAGGAACCATGAAGCCAGGAAAAGAGGCAGTGCTGCATGCAGCGGACACGTCACAGAATATAGAAATTGGTGTGCTATTAGAGAACTTTCCTGTGTGTAAAGAGCTGCTTATTCCTCCCGGTACACAAAACTATGTGGTGCGCATGCGGCTCTATGATGTCAACAAACGCCTGCTCTGTCTCACCATCCGGATTATTCTCAGAGCCCAAGGAGCATTAAAAATCCTCATCTCTGCTCCCTACTGGCTTGCCAACAAAACTGGGCTGCCTCTGATTTTCCGTCAGGACAATGGAAAAACGGATGCCGCTGGACAGTTTGAAGAGCACGAGTTAGCCAGGAGTTTGAGCCCATTGCTCTTCTGCTACACTGACAAAGAGCAGCCCAATATGTGCACCATGCGGATCGGGAAAGGAATCCACCCAGATGGTGTTCCAGGATGGTGTCAGGGTTTCTCTCTGGATGGAGGGAGTGGAGTGAGAGCAGTCAAAGTCATCCAGCATGGCAACAGACCTGGACTTATCTATAATATTGGAATAAATGTGCGAAAAGGGAAAGGGCGCTATCGTGACACACATATTGTGACTTTTGCTCCACGATACCTGCTTGACAATCGATCATCTCACAAGCTAGCCTTTTCTCAGAGGGAATTTGCCAGAGGAAAGGGCACTGCAAATCCAGAAGGATACATCTCCACCCTGCCAGGCTCCAGTGTGGTGTTCCACTGGCCTAGAAATGACTACGATCAGCTTCTCTGTGTTAGACTCATGGATGTTCCCAACTGCACCTGGTCTGGAGGTTTTGAGGTCAACAAGCCTAAATCTTTTCACATCAACATGAGAGACACGTTGGGGAACTGCTTCTTCCTGCGTGCTGAGATTGCTTTGAAAGGGGCAACGCATCAAATCTCATTCAGTGATACTGACCAGCTGCCCCCACCCTTCCGTATAGATAACATCTCTGAGGTGCCTATCCAGTTCTGGCAACATGGAGTTGCTGATATCAGGCTACACACAGAGGTCAAACCTGGTGCAGATCTGGACTATGCCTGTGATGAGCCGATTCTTGAGCCCTATCTCACAGTCACTGTGAAAGGAGCTGGATCCTCCGAGGTGACCGCTGACATGAACTTCTTCAGAGAATACAACAAACTCTACTATGAGAACTTCATCTACATTGCTGCTTCATTCACATTCTCAGAAGATGGAGGAAAGAGGCCAGTGGGGAAAAATCGGGCAGTTAGCTGTGCTGAACTGGTGCTGGATGTGGAGACTAAAACGCAGAGAGTCATCCTGAAGAAAAAGGAGCCTGGAAAGCGCTCCCAGCTTTGGCGAATGACAGGAAGTGGAATGCTGTGTCATGAGGGCTCATCACCTCCACAGAGCAAACCTTCTCAGCCTCGACCCCTCAGTTCTTCTTTGGTGCTTGATATTGCAGGACTGGCTGCAGTGACAGACAACAGCTATGAGCCTCTGATGTTGAGACGGCCAGACAGCCGCCGCAGCACCACCCAGACTTGGCACTTCAACTCTGGCATGTTGACCTGTGGTTTACCCAGACTAGTTGTCCAGGTAAGCGGAGGAGTGTCTGGACTGTATGATGGTGCAGAGGTGGTACTGGGACCAGACTCTGGTATTTTGGAAGCGACGCCTGAGCAACAGTTCATCAACCAGAAAATGCGACCTGGCTCGGGGGTTCTGTCAGTTCAGGTCCTTCCTGATGGGCCCACGAGAGTATTACAGATCAGTGACTTCAATCAGCGGCGCGTGAATAGACCCTCTCCAAGCACAGAGGAAGACCCGAATAAAGAGATAGCTCAGACAAAATTCCCAGAGGAGGAGCTTGAgGTGGTGGTGAACCTAGAGGAAGGAGTGGGCCTATCACTGGTGAACAAGCTCCCTGAAGAGTTGGTGTTTGCCACCCTGTCTGGCATTGATGTACACTTTACCCGCACTGCCGCCAACCAAGTACTGGAACTTACAGTGAAAAACATTCAGGTGGACAACCAGCTTCTGGGCACCACTCACCCTGTGCTACTATGTGTGACTCCAGGCTCCTCTGAAAGTACTGCATTGGATTCAGGTCCTGCTCTGCAGGTCAACGCTGTGAAAGTGCCCAGCAGGCTTATGCTCACAGACCTCTTTAAGCATCTGATGGTCACAGCTCGACGCTACACTGTAATCATAGAGGAGAAGCTCTTAATGAAACTGCTGATATTCTTTGGCTACGGTCAGACAGAGGGAGAGATGGAGAAGCTGGATGAGAACATCTATGAGAAAGCCAGTGAAGATCCAGGAACACCAAAGCGCTATTATTTTGAGAACTTGAAAATCAGTCTCCCTCAGGTCAAGCTTAGTGTGTTCACCTCTCACAAGCTGCCCCATGACCTTAAGGCCTTGAAGGGAACCCTTGGCTTCCCACTCATTCGGTTTGAAGATGCAATCATCAACATGTACCCCTACACTCGAGTTCATCCCTATGAGACACAGGAGATGGTCATCAATGATATTCTCAAGCACTTTAAAGAGGAGCTTATCAGTCAGGCAGCTCAGATCCTAGGCTCGGTGGACTTCCTGGGTAACCCCATGGGCCTACTGAATGACGTGACTGAGGGGATGAACGAGCTCATTAAGTATGGCAACGTTGGAGGACTCATCCGCAGTGTTACACATGGCGTTTCCAACTCAGCTGCCAAGTTTGCAGGTACCCTATCAGATGGATTAGGCAAGACAATGGACAATCGGCATCAGACTGAACGAGAGTGCATTCGCTATCATGGAGCCACTAGTGGAGAGCATCTTGTGGCAGGGATTCATGGTCTTGCTCATGGTATAATTGGCGGCCTGACCAGTGTGATAACGTCAACAGTAGAGGGAGTGAAGACTGAAGGGGGTGTCAGTGGATTTTTCTCCGGTCTGGGGAAGGGACTGGTTGGCACAGTGACCAAACCTGTTGCAGGAGCATTGGATTTTGCATCAGAAACAGCACAAACTGTCAGAGACATGGCCAGCGTAAACAACAGGCTAAGTGTACAGCGAGTAAGGAAGCCGCGCTGCTGTAAGGGCCCTCAGGGGCTGCTGCCTCGATTCTCCTCCCTACAAGCAGATGGACAAGAACAGCTCTTTCACTTAACTGACAATATCCACTCTGAATATTTTATTGCAGTGGAGCCCATAGACACCTACTGTGTGCTGATCTCCTCCAAAGTGGTGTATTTTCTCAAGCCTGGAGAATTTGCGGATCGAGAAGCAATCTTTTTGGAGGTCAAATATGATGATCTCTATCATTGTCTGGTGTCCAAGGATCACGGGAAAGTATATGTGCAACTTACTAAGAAAGCAGAAAGCACCAGTAGTGGGGTGGCCATTCCAGGTCCATCTCATCAGAAACCAATGGTCCATGTGAAAAGCGAGAGCCTTGCCATCAAGATTTCGCAAGAAATCAATTATGCCAAGAGCCTTTACTATGAACAGCAGCTCATGCTGCCTCCCAGTGAGAATGAGGATAGCTTATTATTAGACTCTTAACTACACTGACCTGCAGGGTAAAAAGTGTTACTTGCTCATTTTTCAACAGCTACTTCCTTTTTTCTGTTTCTGTGAAAGGATAGTAATAAATCAGCAGAGCGTATTCGCCCACTTAGACCAGTAAACGGGACATGCTCACAGCATGTGGTTTGTTCAATGAtgcaaactagcctagaggggcTGCTGAAAGCTCCAGCAAGCACAGATTTAACTTGAATATGCAAGTATTTT

Function

GO:

id name namespace
GO:0006623 protein targeting to vacuole biological_process
GO:0007005 mitochondrion organization biological_process
GO:0045053 protein retention in Golgi apparatus biological_process
GO:0019898 extrinsic component of membrane cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050912-1 Predicted to be involved in mitochondrion organization; protein retention in Golgi apparatus; and protein targeting to vacuole. Predicted to be extrinsic component of membrane. Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 4. Orthologous to human VPS13D (vacuolar protein sorting 13 homolog D).

Ensembl:

ensembl_id ENSDART00000148128

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045000 lncRNA downstream 1499 21654274 ~ 21695061 (-) True XLOC_022325
TCONS_00044064 lncRNA downstream 4137 21683776 ~ 21692423 (-) True XLOC_022326
TCONS_00044999 lncRNA downstream 46685 21646702 ~ 21649875 (-) True XLOC_022324
TCONS_00044998 lncRNA downstream 688606 21004206 ~ 21007954 (-) True XLOC_022316
TCONS_00044997 lncRNA downstream 757982 20858313 ~ 20938578 (-) True XLOC_022315
TCONS_00044733 lncRNA upstream 390972 22139777 ~ 22151790 (-) True XLOC_022332
TCONS_00045001 lncRNA upstream 463320 22212125 ~ 22216128 (-) True XLOC_022333
TCONS_00045002 lncRNA upstream 809757 22558562 ~ 22591687 (-) False XLOC_022335
TCONS_00045003 lncRNA upstream 841896 22590701 ~ 22591803 (-) True XLOC_022335
TCONS_00045004 lncRNA upstream 1263483 23012288 ~ 23023994 (-) False XLOC_022339
TCONS_00044061 mRNA downstream 161520 21521506 ~ 21535040 (-) False XLOC_022323
TCONS_00044062 mRNA downstream 161822 21526661 ~ 21534738 (-) False XLOC_022323
TCONS_00044063 mRNA downstream 162105 21526681 ~ 21534455 (-) True XLOC_022323
TCONS_00044060 mRNA downstream 162611 21520769 ~ 21533949 (-) False XLOC_022323
TCONS_00044059 mRNA downstream 181378 21500218 ~ 21515182 (-) True XLOC_022322
TCONS_00044067 mRNA upstream 1622 21750427 ~ 21763598 (-) True XLOC_022327
TCONS_00044068 mRNA upstream 26631 21775436 ~ 21797517 (-) True XLOC_022328
TCONS_00044069 mRNA upstream 54605 21803410 ~ 21946603 (-) False XLOC_022329
TCONS_00044070 mRNA upstream 57994 21806799 ~ 21814739 (-) False XLOC_022329
TCONS_00044071 mRNA upstream 153662 21902467 ~ 21946659 (-) True XLOC_022329
TCONS_00044058 other downstream 182214 21499585 ~ 21514346 (-) False XLOC_022322
TCONS_00044044 other downstream 1357963 20325741 ~ 20338597 (-) True XLOC_022305
TCONS_00044043 other downstream 1367938 20325698 ~ 20328622 (-) False XLOC_022305
TCONS_00044031 other downstream 1570349 20121003 ~ 20126211 (-) False XLOC_022300
TCONS_00044082 other upstream 894599 22643404 ~ 22647682 (-) False XLOC_022337
TCONS_00044083 other upstream 894859 22643664 ~ 22650578 (-) True XLOC_022337
TCONS_00044084 other upstream 1114652 22863457 ~ 22863571 (-) True XLOC_022338
TCONS_00044095 other upstream 2399533 24148338 ~ 24167317 (-) False XLOC_022346
TCONS_00044112 other upstream 2694377 24443182 ~ 24444254 (-) False XLOC_022355

Expression Profile

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