XLOC_022825 (si:dkeyp-28d2.4)


Basic Information

Item Value
gene id XLOC_022825
gene name si:dkeyp-28d2.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12894282 ~ 12918330 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045372
TCAACTTTAAAGCAGGAATATTTACAGTTAACAATGTTGATTTTTTTAGTGTTCTGTGTTTTTTGCAGAGTTCCTGCGATGTCTGTGTTCAAGACCACATTTATAATAATCATCAGCAGCTTTGTGTTTCTACACACTCACTCAGCTGATGTTCAGTACTCTGCTGTGATGCCGCACACAGTAACAGCTTTGACAGGCTCTTGTGTGCAGATTCCCTGTACATTCAACACCTCCAATTTTGAAGACAAACTTAAGGAAACAGACAAGTATTTTCATGGCGTCTGgctaaaaaataaatcacagtttGTAAACACAGACAGTTTTATAGCTTTTAATAGCAGTAAAAACATCATTAGAGGATTCAGCGATATACAGATGACTGGGGATCTCAGTAAGAGGAACTGCACCACTGTTTTCTACAACATGATGATGAACCACTCAGACAAATACTACTTCAGACTAGAAGCAGAGCCAGATGTGTTTAAAGGGACATTTATCAATGAACCTGTGAGGATCAGTGTCAGAGATTTAGCAAAACAACCTGAACTTGAACCCAAGAATCTGTCCAATGTGATGGAGGAACGTACAGTGAATCTGAGCTGCTCTGCTGAAGCCCCCTGCCCAAAACAACCTCCGACAATATCCTGGTCTTACATTCCTAGATCTGCCAACATCACAACACAGTTACTGGAAAACCCCGATAAAACACAATCAGTGTTTTCACTCATGACCTTCAAAGCTTCATACAACGACCACAGAAAGAACATCTCCTGCATTGTTACTTATCCAAGAAATGAATCTAAAAACTTAACTGTGATGACCAATGTGATGCTACTAGTCCAGTTTCCTCCAAAAGAAACTCATATCACCATCAGTCCATCTGCTTCAGTTTCTGTTGGCACTAATGTGACTTTGACCTGCAAAAGCAAAGGCAGTCCATCAAATAATATGACCTACACCTGGTACAAACTGGGAAAAGACACGGCAATTGCTCGAGAAAAGAAGATTACTTTCACTGTTTCTCAGAATGATACAGGATTCTACTTGTGCACTGCACAAAATAAACATGGAAACCAGTCATCCAGACCAAAAAACATACAGCTTACATCTGAAGAATCCTCTCGTCTTGTCATTTATGGCTGTACAAAAGGGATTTTCACTTTAATTCTGTTGTCTGCAGTATGTTTTTACTATTTGAGAATAAAGACATCAGGTCAAGCCCATGATACAGGAAGTAATCAGGCTATGGATAAAAACAGCGATGCTGTGGCTATTTATGCTAACAATGGCTTTGTGATCAGTGAGAAAAATGAgaaagaaactgctgatcttcatTATGGAGaaattgacttttccaaactccAGACGAGTCACGCAACAAGAGAATTTTTaagtaatgaaccaccaacagaGTATGCCGAGCTTCAGGTGACAGagaaaaagacaaaaatcaaCAAATGA
>TCONS_00045373
AGACTAATTTGTGACAACTGTAATGTCCAGTGCTGTCCACTCAACAAATGGCAGGAAACCAGATTGGATCCTTCATTTTCATCAGTTCTTTATTGCTACATACTCAACTAGCTGATGTTCAGTATTCTGCTGTGATGCCGCACACAGTAACAGCTCTGACAGGCTCTTGTGTGCAGATTCCCTGTACATTCAACACCTCCGATTTTGAAGACAAACTTAAAAAGACAGTTAAGTCTTTTTATGGCCTCTGGCTAAAAAAGATACCGCAGTATGGAAACACAGACAGTTTTATAGCTTTTAATAGCAGTAACAACATCATTAGAGGATTCAGTGACATACAGATAACTGGAAATCTCAGTGAGAGGAACTGCACCACTGTCTTCTACAACATCATGATGAACCACTCAGATAATTACTACTTCAGACTGGAAACAAAGCCAGAGGtgtttaaagcaacatttaacaatcaacCTGTGAGGATCAGTGTCAGAGATTTTCCACAACAACCTGAACTTAAACCCAATAATCTACCGTATGTGATGGAGGAAAGTACAGTAAATCTAAATTGCTCTGCTGAAGCCCCCTGCCCAAAACAACCTCCTAATGTGTCCTGGTCTAACATCCCTGAATCTGCCAGCATTACAACACAGTTACTGGAGAAACCTGATAAAACCCAGTCAGTGTTTTCACTCATGACCTTCAAAGCTTCATACAGAGATCACAAAAAGAACATCTACTGCACTGTTACATATACAAGAGAAACTGCTAATGACTCAACTGTGGAAACCAACGTGACGCTACTAGTCCTGTTTCCTCCAAAAGAAACTCATATCACCATCAGTCCATCTGCTTCAGTTTCTGTTGGCACTAATGTGACTTTGACCTGCAAAAGCAAAGGCAGTCCATCAAATAATATGACCTACACCTGGTACAAACTGGGAAAAGACACGGCAATTGCTCGAGAAAAGAAGATTACTTTCACTGTTTCTCAGAATGATACAGGATTCTACTTGTGCACTGCACAAAATAAACATGGAAACCAGTCATCCAGA

Function

symbol description
si:dkeyp-28d2.4 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-68 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDARG00000041828

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045372 False 1461 mRNA 0.39 7 12894282 12918330
TCONS_00045373 True 1052 mRNA 0.40 4 12913329 12915033

Neighbor

gene id symbol gene type direction distance location
XLOC_022824 NA coding upstream 40090 12853386 ~ 12854192 (+)
XLOC_022823 nanog coding upstream 52179 12835935 ~ 12842103 (+)
XLOC_022822 si:ch211-196f5.2 coding upstream 141780 12740848 ~ 12752502 (+)
XLOC_022821 rec8b coding upstream 159699 12690163 ~ 12734583 (+)
XLOC_022820 NA coding upstream 601747 12291736 ~ 12292535 (+)
XLOC_022826 psme1 coding downstream 27473 12945803 ~ 12954482 (+)
XLOC_022827 eloca coding downstream 65104 12983434 ~ 12988849 (+)
XLOC_022828 flj11011l coding downstream 71397 12989727 ~ 13016024 (+)
XLOC_022829 stau2 coding downstream 99256 13017586 ~ 13240057 (+)
XLOC_022830 si:ch211-171b20.3 coding downstream 359243 13277573 ~ 13281131 (+)
XLOC_022817 CU929203.1 non-coding upstream 761837 12129726 ~ 12132445 (+)
XLOC_022816 NA non-coding upstream 792144 12095530 ~ 12102138 (+)
XLOC_022814 NA non-coding upstream 832930 12055030 ~ 12061352 (+)
XLOC_022832 NA non-coding downstream 436931 13355261 ~ 13600272 (+)
XLOC_022835 NA non-coding downstream 840370 13758700 ~ 13764804 (+)
XLOC_022837 NA non-coding downstream 1136766 14055096 ~ 14078636 (+)
XLOC_022840 BX248495.1 non-coding downstream 1432570 14350900 ~ 14351020 (+)
XLOC_022845 NA non-coding downstream 1663914 14582244 ~ 14585809 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000327_02453419_02506578 NA coding CI01000327 null 2453134 ~ 2506683 (-)