XLOC_022829 (stau2)


Basic Information

Item Value
gene id XLOC_022829
gene name stau2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 13017586 ~ 13240057 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045381
CCCATTCAATTCTCCAAGCACAGCTCTGCTATCGTCCAAGTGGCTCATATTTGCAAAAACACATCTTGTTCATATGTTGGTTTGCTCCTGGTACCATCAGTTCTCTTTAGTGTTTGCCAATGTTGGAGGTGTAACTGGGGTCTGGCCCTGGACGAagCGATAGAGCATGGCTCAAGTGAAAGTGCAGACATCAGCCCCCTTGTCTGGACCTGGCCTGACCGCTGTGGCGCCTGCTGTGGCCATGCCCAGCCCAGGAGCTCTGAGTCTGCAGCCTACCATCAATGGCACAGTGCCAGCCACAACGCCCACCTGCCCCAGCCCTGCCTCTGGCTTTGTGGACTCCACTGTACCAGCCAGCCCATCAGGCCCTCCTCAAGAAAACATGGCAAACCCTAAAGAGAAAACTCCCATGTGTTTGGTGAATGAGTTAGCCCGTTTCAACAGGATTCAACCTCAATACAAGCTACTAAATGAGAAAGGACCTGCACATGCTAAGATCTTTACGGTGCAGCTGTGCTTGGGGAACCAGGTATGGGAGTCTGAAGGCAGCAGCATTAAAAAGGCCCAGCACTCCACAGCTACCAAGGCCCTGGCAGAGAGCAGCCTCCCCCGGCCTCCTCCACGCTCTCCTAAAGCTGACAGCAACAGCAACCCAGGAAGCATCACTCCTACAGTGGAGTTAAATGGCTTGGCTATGAAGCGAGGGGAGCCGGCGATCTATAGACCCCTGGATCCCAAACCCATTCCCAACTACAGAGCCAATTACAACTTTAGAGGAATGTTTAACCAGAGGTACCATTACCCAGTGCCTAAGGTATTTTACGTGCAGCTGACAGTGGGGAACAACGAGTTTATCGGAGAGGGACGAACTCGCCAAGCTGCCCGACACAATGCAGCCATGAAAGCCCTCCAGGCCCTGAAGAACGAACCCATTCCAGAGAGACCACCTCAGTGTTCagaagagaagaaagaaactgaggAGAACAGCGATGCCAGCAAATCTGAGATCAGCCTGGTCTATGAGATTGCCCTTAAGAGGAACCTGCCTGTTAACTTTGAAGTGCTGAAGGAAAGCGGACCCCCGCACATGAAGAGTTTCCTCACACGTGTGACAGTAGGAGAGTTCTCGGCCGAGGGCGAGGGGAATAGTAAGAAACTCTCCAAGAAGAGAGCAGCCCTCTCCATTCTACAGGAGCTGAAGAAACTGCCAGTGCTTCCTGTTGTGGAGAAACCCAAAGTGCATTACAAGAAGCGGCCCAAGACCATATTAAAGACAGGACCAGAGTACGGACAGGGCATGAACCCTATTAGCAGACTGGCTCAGATCCAACAGGCCAAAAAGGAGAAGGAGCCTGAATACATGCTGCTTTCAGAGAGAGGGATGCCTCGTCGAAGAGAATTCATCATGCAGGTGAAAGTAGGCACTGAAGTGACCACAGGAACTGGACCCAACAAGAAAGTGGCCAAGCGTAATGCAGCTGAAGCCATGCTGCTTCAACTGGGATACAAGGCATCGACTCCATTACAGAACACTCCGGAAAAGATGGACAACAAAGGCTGGAATGGACAAAGGGCTGCTTTTCCTGAAACAACGAGCAACACACAAAAAGGAATTCTTCACCTTTCCCCGGACGTGTATCAAGAAATGGAAGCAAGTCGCAACAAAGGAGTCCCCGGTGCTCCTGGAAACTTCCCAACAGCCAAAGAGATTGGCCAAGGGTCAGCAGGGCCATTCTGCACCCCATCGGTGGGCAACACTGCAACCATCGCGAAGGAGCTGCTGCTGAGCGGGACGTCACCCACCGCTGAAGCCCTCGTCCTAAAGGGAAAAGCACCTGCTTTGGCCTGTGGCTCCATCCAGCCTTCCCAACAGCTGGAGTACTTGGCTCACATTCAAGGTTTCCAGGTGCAGTACTCAGACCGGCAAACTGACAAAGAGTTCATGACTTACCTGACCCTCTCACCTGTGCAGATGACCTTTCACGGCATTGGGAGCTCCATTCCAGCTAGCCATGACCAGGCTGCTCTGAGTGCCTTGAAACAGCTGTCAGAACAAGGACTGGACCCGGTGGACGGACCAATCAAGGTAGAAAATGGATCATGTGACATACAAGCGAAGCGTCTAGCCGAGAGGACGGAGAGCAAACCGACTAACTCAGGCACCACTGCTCAGGACTGCAAGGATTCAAAGGCTGTCGTCTAGGAGCTGAACCCACCCTTATACCCCGTCCCACCCTGAAAGCCCCCACGACCGCCGCTGCATCCTTCTACACGTGTCAACATGCAATATGGTGGATGTgtctcatgaaaaaaaaaattaaaaaaaaatgcattctttGAGTCTATGTGAAGACAACACTATCTTAACACAACATTTATTTACTCTagaattaactaaaaaaaaaaaagcaagcaaactttaaaaaaaaaaaagataaaaatataatGCATGGTAATGTTTGAAAATTGAGGGAAATTTCCCCATTTGATAGATGTTTGAGTATTATTTTCACCTTGCCTCCAAGTGGATTTAAACAGGCTTATGTCATGCCATTAGTATAAAGGAAAACATTATTGGGGGAAACCAAGTTGTGTATCTTATTTGGGGGGGTTCTATTATTTTCCTTTTCTCTTTAATCTATGAATAATATTGCTTGAGTATTTAAGGATTAACCGATGCCAGTGCTGTGAAGTTGTAGTTGTTGTCTTCATATATAGTCACCCGGCTTACCGTGTATGCTGACATAAAGCATTCATCTATCTTTATGGATGTATATGACTTGTAGAGTATCTTATGCAGAGGAAAAGAAAAACCTATAATACGAGTGTAAACCAATGGATAAAACTGACGCTAGAGGTCAACAGCACAGAATCATGATGCGACTGTTGTCCGCTCTTGCCTTCTCGAAACGCTCCTACGATTCTTGTCAGAGGCCCTGCGTAGTGATCGGTGCCTCTTTAGCGCAGTCCTGTTTGACAATTGTTTTCTTCTTCCTTCAGTTTTGTCCAGCACATCTACACCTATGTTGTGTGTTGTATTGACTTGATACATCAACTGAGTGCTTTTAAGGACTGCATTCTGGAGAAAACAAACGCTGGGCTCAATATACCTGTTGTCTTTTCAGAAAGGATCAAGTTAAAGTACCGTTAACTCGTAGGAAGCGCGTTTTTCTCTCCCTGATGGAATACAGTCTAATAACAGACATGTCAGTTAGTTCAAATGCAGTAAAATCACATCAGTTATGTTCAAGA
>TCONS_00045382
ATGTTGGTTTGCTCCTGGTACCATCAGTTCTCTTTAGTGTTTGCCAATGTTGGAGGTGTAACTGGGGTCTGGCCCTGGACGAagCGATAGAGCATGGCTCAAGTGAAAGTGCAGACATCAGCCCCCTTGTCTGGACCTGGCCTGACCGCTGTGGCGCCTGCTGTGGCCATGCCCAGCCCAGGAGCTCTGAGTCTGCAGCCTACCATCAATGGCACAGTGCCAGCCACAACGCCCACCTGCCCCAGCCCTGCCTCTGGCTTTGTGGACTCCACTGTACCAGCCAGCCCATCAGGCCCTCCTCAAGAAAACATGGCAAACCCTAAAGAGAAAACTCCCATGTGTTTGGTGAATGAGTTAGCCCGTTTCAACAGGATTCAACCTCAATACAAGCTACTAAATGAGAAAGGACCTGCACATGCTAAGATCTTTACGGTGCAGCTGTGCTTGGGGAACCAGGTATGGGAGTCTGAAGGCAGCAGCATTAAAAAGGCCCAGCACTCCACAGCTACCAAGGCCCTGGCAGAGAGCAGCCTCCCCCGGCCTCCTCCACGCTCTCCTAAAGCTGACAGCAACAGCAACCCAGGAAGCATCACTCCTACAGTGGAGTTAAATGGCTTGGCTATGAAGCGAGGGGAGCCGGCGATCTATAGACCCCTGGATCCCAAACCCATTCCCAACTACAGAGCCAATTACAACTTTAGAGGAATGTTTAACCAGAGGCggcccacattcacacacataaataaaagaCAACGCTAATGTTTGCCTTCCAGTGGGTTTGTCTCCCTGTCCTCTCCCTAGGTGTTCCCGCTTTTGGCTTGTGTGCCTTTCTAATGCAGACCAGACAGGCTcggctggtgtgtgtgtgctgatagATTATTGGGTCTAATGTGGTTTAGAGTGTGTCAGCAAACGACTTTCCCACGTCCCACAAAGGGGCCTCCTACAAGCCAGAGCCGCAGCCACTCTCCCTGCACCTGTAAGCAGAAAATCCACCGCCCCAACATCCTGGACTGGTCCCATGTTGCACTTGGCATTTCCTCCAAGCGTCTGGGACCACGCTTGACATGCGAGGCCTGAATTCTGGGAGAGAAATGCTGAATCACTGTTGGAGACACGCAAGGAGCTGGCGCAGAGATGTGACTCTGAAGACACATGTGCTGAAATGATTTTACACCCATTTAAAgaaatattgcaataaaaaacagacaaaacctCCCACTCAGTTAGAGGAATCAAGGAAAGGAGTTACCATAAAAAGGTTGGAAGATATGTTGGGAGAAAAAAGCTGGGAGATATGTTTATGAAGCAGAACTGAAACCACAACAATAACATAAGTGTTTGAATCCTGTTTTATcgaatgcttttttatttttttaattattatatttttacatttatgtacattttattacatttattgacattgtaattaaaaataagaaaaa

Function

symbol description
stau2 Predicted to enable RNA binding activity. Acts upstream of or within germ cell development and germ cell migration. Predicted to be located in microtubule. Is expressed in midbrain; oocyte; and otic vesicle. Orthologous to human STAU2 (staufen double-stranded RNA binding protein 2).

GO:

id name namespace
GO:0007281 germ cell development biological_process
GO:0008354 germ cell migration biological_process
GO:0005874 microtubule cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-687 Predicted to enable RNA binding activity. Acts upstream of or within germ cell development and germ cell migration. Predicted to be located in microtubule. Is expressed in midbrain; oocyte; and otic vesicle. Orthologous to human STAU2 (staufen double-stranded RNA binding protein 2).

Ensembl:

ensembl_id ENSDARG00000026801

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045381 False 3252 mRNA 0.48 15 13017586 13240057
TCONS_00045382 True 1448 processed_transcript 0.48 6 13017659 13068380

Neighbor

gene id symbol gene type direction distance location
XLOC_022828 flj11011l coding upstream 1562 12989727 ~ 13016024 (+)
XLOC_022827 eloca coding upstream 28737 12983434 ~ 12988849 (+)
XLOC_022826 psme1 coding upstream 63104 12945803 ~ 12954482 (+)
XLOC_022825 si:dkeyp-28d2.4 coding upstream 99256 12894282 ~ 12918330 (+)
XLOC_022824 NA coding upstream 163394 12853386 ~ 12854192 (+)
XLOC_022830 si:ch211-171b20.3 coding downstream 37516 13277573 ~ 13281131 (+)
XLOC_022831 SBSPON coding downstream 76680 13316737 ~ 13337149 (+)
XLOC_022832 NA coding downstream 115204 13355261 ~ 13600272 (+)
XLOC_022833 trpa1b coding downstream 395051 13635108 ~ 13715761 (+)
XLOC_022834 msc coding downstream 495559 13735616 ~ 13741624 (+)
XLOC_022820 NA non-coding upstream 725051 12291736 ~ 12292535 (+)
XLOC_022817 CU929203.1 non-coding upstream 885141 12129726 ~ 12132445 (+)
XLOC_022816 NA non-coding upstream 915448 12095530 ~ 12102138 (+)
XLOC_022814 NA non-coding upstream 956234 12055030 ~ 12061352 (+)
XLOC_022835 NA non-coding downstream 518643 13758700 ~ 13764804 (+)
XLOC_022837 NA non-coding downstream 815039 14055096 ~ 14078636 (+)
XLOC_022840 BX248495.1 non-coding downstream 1110843 14350900 ~ 14351020 (+)
XLOC_022845 NA non-coding downstream 1342187 14582244 ~ 14585809 (+)

Expression


Co-expression Network