XLOC_022831 (SBSPON)


Basic Information

Item Value
gene id XLOC_022831
gene name SBSPON
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 13316737 ~ 13337149 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045384
GGCCAAAAGAGCAgctcagagagagagaaagctctCACACACCCTTCACTCAAACAACATTTCCCCACCTCTCTTTTTCTCTACCTCGTCCACTTTTGTGTGCAGGATTGAGGGCAGAAACGCTCCAGACGCTCTCAATTCAACAGAATAGCTCTTTTCTTTCCACCTGAGCACTTGTTTTTCTCTGGGCAAACAGACGAGCTGTGTGGCCACAGGAATTCTAGGTCACAGGGATTCCTCCGGCTAAGATGACTTGTGATAGTTTACCTGTGATAGTTTCATTTCCTCTTCAGCAATGAGATCTGTGGCATTGATTTTAAGAGGAACTTGAGTACAGTAAATGGGACGTTTGCCTTTTTAAGCTATAGGGGGAACATTGAGTTCTTTTTGGAAATTATGGGGTTGTTGTCAGTCAAGCAGAATGCCCTCCTGCTGGTGGCTACTTTTTTTGGGATGTGCCACTTTTCCGATGGGGGATGCTCTGGTAGATGCTGTCAAGGCAGTGATTTCACCTGCTTTACCACAGACTGGAGGATGGACCATGTTTATGGGACATGCTATTGTGATGAGAAGTGTTTAAAGACTAAAGATTGTTGCTTTGATTACCCAGCAGAGTGCCCAGCCCAGCCGTGTGTAGTGAGTGAGTGGAGTAACTGGAGTGGGTGTGCACAGCCTTGCCAGCCCTCATTCAGAGTCCGGAGACGCAACGTTGAGAGACTGCCCCAAAACAACGGAGAGGCCTGTCTGAGTCTGGAAGAGCAGGCCGGATGCATGGAGTATCAGGACCACCAGGGCCAGTTCTGTTCTCAGACACAAGGAGCAGCATTTATAACCACAATGGAGTACAGCAAAGGCAGAACACATGAATTGTATGGGGCCCCTGTGGATGCTGGTTTCTGTATGGAGTTCAAGATGGAGTCTCTGACAGCTCAGTGTATGGGGGAGAACAGACCTTATGCCCGCTGGATGCAGTATTTGAGGGAAGGATACACCGTCTGTGTGGCCTGCCAACCTCCTGCCAATCACAGCTGGGGCTGTCAAGGAGATGGTAACCTGGCGGAAAGGAATGATCTTCTTCACTGGCAGGCGGTGGGAAACCCTCCTTGCAGAGGAACATGGAGGAAAGTACAGAGACTACAGCACTGCTCCTGTCCACAAGTGCACAGCTTcatcttcatttaa

Function

symbol description
sbspon Predicted to be an extracellular matrix structural constituent. Colocalizes with collagen-containing extracellular matrix.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000110160

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045384 True 1182 mRNA 0.49 5 13316737 13337149

Neighbor

gene id symbol gene type direction distance location
XLOC_022830 si:ch211-171b20.3 coding upstream 35606 13277573 ~ 13281131 (+)
XLOC_022829 stau2 coding upstream 76680 13017586 ~ 13240057 (+)
XLOC_022828 flj11011l coding upstream 300713 12989727 ~ 13016024 (+)
XLOC_022827 eloca coding upstream 327888 12983434 ~ 12988849 (+)
XLOC_022826 psme1 coding upstream 362255 12945803 ~ 12954482 (+)
XLOC_022832 NA coding downstream 18112 13355261 ~ 13600272 (+)
XLOC_022833 trpa1b coding downstream 297959 13635108 ~ 13715761 (+)
XLOC_022834 msc coding downstream 398467 13735616 ~ 13741624 (+)
XLOC_022835 NA coding downstream 421551 13758700 ~ 13764804 (+)
XLOC_022836 eya1 coding downstream 531943 13869092 ~ 14015459 (+)
XLOC_022824 NA non-coding upstream 462545 12853386 ~ 12854192 (+)
XLOC_022820 NA non-coding upstream 1024202 12291736 ~ 12292535 (+)
XLOC_022817 CU929203.1 non-coding upstream 1184292 12129726 ~ 12132445 (+)
XLOC_022816 NA non-coding upstream 1214599 12095530 ~ 12102138 (+)
XLOC_022814 NA non-coding upstream 1255385 12055030 ~ 12061352 (+)
XLOC_022837 NA non-coding downstream 717947 14055096 ~ 14078636 (+)
XLOC_022840 BX248495.1 non-coding downstream 1013751 14350900 ~ 14351020 (+)
XLOC_022845 NA non-coding downstream 1245095 14582244 ~ 14585809 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_00312158_00314088 NA coding CI01000018 null 311176 ~ 314889 (+)