| Item | Value |
|---|---|
| gene id | XLOC_022836 |
| gene name | eya1 |
| gene type | coding |
| species | zebrafish (Danio rerio) |
| category of species | model fish |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 13869092 ~ 14015459 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| symbol | description |
|---|---|
| eya1 | Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within adenohypophysis development; otic vesicle morphogenesis; and otolith development. Predicted to be active in nucleus. Is expressed in several structures, including adenohypophyseal placode; brain; ectoderm; head; and lateral line system. Human ortholog(s) of this gene implicated in branchiootorenal syndrome and branchiootorenal syndrome 1. Orthologous to human EYA1 (EYA transcriptional coactivator and phosphatase 1). |
| id | name | namespace |
|---|---|---|
| GO:0045739 | positive regulation of DNA repair | biological_process |
| GO:2001240 | negative regulation of extrinsic apoptotic signaling pathway in absence of ligand | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0071600 | otic vesicle morphogenesis | biological_process |
| GO:0042471 | ear morphogenesis | biological_process |
| GO:0042472 | inner ear morphogenesis | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0048840 | otolith development | biological_process |
| GO:0035335 | peptidyl-tyrosine dephosphorylation | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0016576 | histone dephosphorylation | biological_process |
| GO:0021984 | adenohypophysis development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| ko05202 | Transcriptional misregulation in cancer |
| ko01009 | Protein phosphatases and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-990712-18 | Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within adenohypophysis development; otic vesicle morphogenesis; and otolith development. Predicted to be active in nucleus. Is expressed in several structures, including adenohypophyseal placode; brain; ectoderm; head; and lateral line system. Human ortholog(s) of this gene implicated in branchiootorenal syndrome and branchiootorenal syndrome 1. Orthologous to human EYA1 (EYA transcriptional coactivator and phosphatase 1). |
| ensembl_id | ENSDARG00000014259 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TCONS_00045389 | False | 1926 | mRNA | 0.50 | 18 | 13869092 | 14013098 |
| TCONS_00045390 | False | 778 | processed_transcript | 0.48 | 6 | 13925066 | 13965939 |
| TCONS_00045391 | False | 2229 | mRNA | 0.49 | 17 | 13925066 | 14013229 |
| TCONS_00045392 | False | 2179 | mRNA | 0.50 | 17 | 13925081 | 14013209 |
| TCONS_00045393 | False | 4414 | mRNA | 0.43 | 19 | 13925129 | 14015458 |
| TCONS_00045394 | False | 4447 | mRNA | 0.42 | 18 | 13925129 | 14015459 |
| TCONS_00045395 | True | 723 | mRNA | 0.45 | 4 | 13932125 | 13947437 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| XLOC_022835 | NA | coding | upstream | 104288 | 13758700 ~ 13764804 (+) |
| XLOC_022834 | msc | coding | upstream | 127468 | 13735616 ~ 13741624 (+) |
| XLOC_022833 | trpa1b | coding | upstream | 153331 | 13635108 ~ 13715761 (+) |
| XLOC_022832 | NA | coding | upstream | 268820 | 13355261 ~ 13600272 (+) |
| XLOC_022831 | SBSPON | coding | upstream | 531943 | 13316737 ~ 13337149 (+) |
| XLOC_022837 | NA | coding | downstream | 39637 | 14055096 ~ 14078636 (+) |
| XLOC_022838 | tram1 | coding | downstream | 199372 | 14214831 ~ 14234824 (+) |
| XLOC_022839 | ncoa2 | coding | downstream | 224737 | 14240196 ~ 14445137 (+) |
| XLOC_022840 | BX248495.1 | coding | downstream | 335441 | 14350900 ~ 14351020 (+) |
| XLOC_022841 | prdm14 | coding | downstream | 435945 | 14451404 ~ 14456103 (+) |
| XLOC_022824 | NA | non-coding | upstream | 1014900 | 12853386 ~ 12854192 (+) |
| XLOC_022820 | NA | non-coding | upstream | 1576557 | 12291736 ~ 12292535 (+) |
| XLOC_022817 | CU929203.1 | non-coding | upstream | 1736647 | 12129726 ~ 12132445 (+) |
| XLOC_022845 | NA | non-coding | downstream | 566785 | 14582244 ~ 14585809 (+) |
| XLOC_022846 | BX294113.1 | non-coding | downstream | 608372 | 14623831 ~ 14636303 (+) |
| XLOC_022847 | BX294113.3 | non-coding | downstream | 619844 | 14635303 ~ 14635419 (+) |