XLOC_022841 (prdm14)


Basic Information

Item Value
gene id XLOC_022841
gene name prdm14
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14451404 ~ 14456103 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045402
ATGTCGGTTTCTCTCTCCAGTCACCCCGCAGTGAGAGACAGGAGTCTGGCTGTCTACCCATCTCTGCCCGGCGCGCACTACGCGGACGTCCTCAAGAGCGCGCACAGCATCTTCCATCCCCTCAAGTCTCTGGGCCGCATGGTGACCGACGCGCAGACGATCATGCCATTTAACTTTAGCGGAGCAACTCCTTTCTTCAGCCACAACAGCGCGATATTCCATGAACAGATCCTTAATGTGTCCAACATTCCGTACTTCCAGCACATCCAGCCTTCGCAAAGCGTGTACAACGCCAGACACGAGGACCAGAGCACTGGCTCACTGTCTGATTTCAGCAGCCCGTCCAGTGTAAAGTCTTCTTCGGCTTTATCTTCTCCGGTTAAGGACAATTTCAGCTGCCCGCAGGCCGCACATCCCACTCCCGAACACGCGCGCACCTACAGTTTTACAGAGGAGGACCTCTTTACCGTCCTGTACGGATATTCCAAAAAACAAGGACAAAATGCTGGACATGCTATTTCTGGATTATCATTTCCTCCCAGCACAGCTGATCGCCAGATTCTCCCTGTTGATATCGAAGGATTTGAACTCCCTGAAGGCATATCGATTCTCCAAACTACTTGTGGAAGCCTTTCCCATTATGGAGCTTTCGCTGATAAAAGTACAATTCCAAAAGGCACCAGGTTTGGACCCTTTCAAGGCAAACTGGTAAACACAAGTGAGATCAAGACCTATGACGACAACACACTCATGTGGGAGATCTTTGAGAACGGCCGCTTGAGTCATTTTGTGGATGGAAGAGGCGCTCCAGGGAATTGGATGTCCTTGGTGAAGTGCGCGCGCTTTCCTGAAGAGCAGAACCTGATAGCGGTGCAGTGTGACGGACAGATATATTATGAGGCCTGCAAAGAGATCCGAGCCGGCCAAGAGCTGCTGGTTTGGTACGGAGATTGCTATGTGCAGTTTTTGGGTATTCCTCTCACCCTCAAAGAGTTCATTGATGACAGTGAAGCTCTCCCGGCAGAAGATTCTGGAGAGGGTTTCAAGTGTGATCGTTGTGGAAAAGTGTTCGCCTATAAGTACTATAGAGACAAACATCTGAAATACACGCGCTGTGTGGATCAGGGCGACAGAAAATTCCCCTGCCACCTCTGCAACAGATCTTTCGAGAAGAGAGATCGTCTTCGAATTCACATTCTCCATGTGCACGAGAAACACAGGCCACATAAGTGCTCCGTGTGCGGCAAAAGTTTCTCGCAGTCCTCCAGTCTGAACAAACACATGCGCGTGCACTCGGGAGAGCGGCCTTACAAATGTGTTTACTGTAACAAGGCGTTCACGGCCTCCAGCATCCTTCGCACACACATTCGCCAGCACTCCGGTGAGCGGCCGTTCAAGTGTAAACACTGCGGGAAAGCGTTCGCCTCTCACGCGGCCCACGACAGCCATGTCCGGCGGACACACGCCAAAGACAAGCAGCTCTCCTGTGATGTATGTGGGGCCACTTTCCAAGAGGCACAAGAGCTGAAATATCACATGAAGGCTCATAAAAAGCGGCCACTTTTGGAAAGCTCTGTTGTTCCTCCCGCTGACGAGAACGCGCTCTTCTCCACCAAAGAGTCTTTACACGCGCAGACACAGCTGGCGGACACTTTTTCTTTCCCCGGGATGACGAGCATCAGCTCCGAGTACAGACCCTGGAACTAA
>TCONS_00045401
ATGTCGGTTTCTCTCTCCAGTCACCCCGCAGTGAGAGACAGGAGTCTGGCTGTCTACCCATCTCTGCCCGGCGCGCACTACGCGGACGTCCTCAAGAGCGCGCACAGCATCTTCCATCCCCTCAAGTCTCTGGGCCGCATGGTGACCGACGCGCAGACGATCATGCCATTTAACTTTAGCGGAGCAACTCCTTTCTTCAGCCACAACAGCGCGATATTCCATGAACAGATCCTTAATGTGTCCAACATTCCGTACTTCCAGCACATCCAGCCTTCGCAAAGCGTGTACAACGCCAGACACGAGGACCAGAGCACTGGCTCACTGTCTGATTTCAGCAGCCCGTCCAGTGTAAAGTCTTCTTCGGCTTTATCTTCTCCGGTTAAGGACAATTTCAGCTGCCCGCAGGCCGCACATCCCACTCCCGAACACGCGCGCACCTACAGTTTTACAGAGGAGGACCTCTTTACCGTCCTGTACGGATATTCCAAAAAACAAGGACAAAATGCTGGACATGCTATTTCTGGATTATCATTTCCTCCCAGCACAGGCAAACTGGTAAACACAAGTGAGATCAAGACCTATGACGACAACACACTCATGTGGGAGATCTTTGAGAACGGCCGCTTGAGTCATTTTGTGGATGGAAGAGGCGCTCCAGGGAATTGGATGTCCTTGGTGAAGTGCGCGCGCTTTCCTGAAGAGCAGAACCTGATAGCGGTGCAGTGTGACGGACAGATATATTATGAGGCCTGCAAAGAGATCCGAGCCGGCCAAGAGCTGCTGGTTTGGTACGGAGATTGCTATGTGCAGTTTTTGGGTATTCCTCTCACCCTCAAAGAGTTCATTGATGACAGTGAAGCTCTCCCGGCAGAAGATTCTGGAGAGGGTTTCAAGTGTGATCGTTGTGGAAAAGTGTTCGCCTATAAGTACTATAGAGACAAACATCTGAAATACACGCGCTGTGTGGATCAGGGCGACAGAAAATTCCCCTGCCACCTCTGCAACAGATCTTTCGAGAAGAGAGATCGTCTTCGAATTCACATTCTCCATGTGCACGAGAAACACAGGCCACATAAGTGCTCCGTGTGCGGCAAAAGTTTCTCGCAGTCCTCCAGTCTGAACAAACACATGCGCGTGCACTCGGGAGAGCGGCCTTACAAATGTGTTTACTGTAACAAGGCGTTCACGGCCTCCAGCATCCTTCGCACACACATTCGCCAGCACTCCGGTGAGCGGCCGTTCAAGTGTAAACACTGCGGGAAAGCGTTCGCCTCTCACGCGGCCCACGACAGCCATGTCCGGCGGACACACGCCAAAGACAAGCAGCTCTCCTGTGATGTATGTGGGGCCACTTTCCAAGAGGCACAAGAGCTGAAATATCACATGAAGGCTCATAAAAAGCGGCCACTTTTGGAAAGCTCTGTTGTTCCTCCCGCTGACGAGAACGCGCTCTTCTCCACCAAAGAGTCTTTACACGCGCAGACACAGCTGGCGGACACTTTTTCTTTCCCCGGGATGACGAGCATCAGCTCCGAGTACAGACCCTGGAACTAA

Function

symbol description
prdm14 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within axonogenesis; regulation of DNA methylation; and stem cell population maintenance. Located in nucleus. Is expressed in several structures, including nervous system; neuroblasts; presumptive neural plate; spinal cord neural keel; and spinal cord neural tube. Orthologous to human PRDM14 (PR/SET domain 14).

GO:

id name namespace
GO:0034972 histone H3-R26 methylation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0019827 stem cell population maintenance biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044030 regulation of DNA methylation biological_process
GO:0007409 axonogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030131-2709 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within axonogenesis; regulation of DNA methylation; and stem cell population maintenance. Located in nucleus. Is expressed in several structures, including nervous system; neuroblasts; presumptive neural plate; spinal cord neural keel; and spinal cord neural tube. Orthologous to human PRDM14 (PR/SET domain 14).

Ensembl:

ensembl_id ENSDARG00000045371

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045402 False 1707 mRNA 0.52 8 14451404 14456103
TCONS_00045401 True 1554 mRNA 0.52 7 14451404 14456103

Neighbor

gene id symbol gene type direction distance location
XLOC_022839 ncoa2 coding upstream 6267 14240196 ~ 14445137 (+)
XLOC_022840 BX248495.1 coding upstream 100384 14350900 ~ 14351020 (+)
XLOC_022838 tram1 coding upstream 216580 14214831 ~ 14234824 (+)
XLOC_022837 NA coding upstream 372768 14055096 ~ 14078636 (+)
XLOC_022836 eya1 coding upstream 435945 13869092 ~ 14015459 (+)
XLOC_022842 si:dkeyp-73g8.5 coding downstream 71832 14527935 ~ 14532069 (+)
XLOC_022843 ngdn coding downstream 84910 14541013 ~ 14557158 (+)
XLOC_022844 thtpa coding downstream 125761 14581864 ~ 14601780 (+)
XLOC_022845 NA coding downstream 126141 14582244 ~ 14585809 (+)
XLOC_022846 BX294113.1 coding downstream 167728 14623831 ~ 14636303 (+)
XLOC_022835 NA non-coding upstream 686600 13758700 ~ 13764804 (+)
XLOC_022832 NA non-coding upstream 851132 13355261 ~ 13600272 (+)
XLOC_022824 NA non-coding upstream 1597212 12853386 ~ 12854192 (+)
XLOC_022847 BX294113.3 non-coding downstream 179200 14635303 ~ 14635419 (+)
XLOC_022853 BX640518.1 non-coding downstream 956886 15412989 ~ 15413105 (+)
XLOC_022859 NA non-coding downstream 1710662 16166765 ~ 16194730 (+)

Expression


Co-expression Network