RNA id: TCONS_00045401


Basic Information

Item Value
RNA id TCONS_00045401
length 1554
RNA type mRNA
GC content 0.52
exon number 7
gene id XLOC_022841
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14451404 ~ 14456103 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCGGTTTCTCTCTCCAGTCACCCCGCAGTGAGAGACAGGAGTCTGGCTGTCTACCCATCTCTGCCCGGCGCGCACTACGCGGACGTCCTCAAGAGCGCGCACAGCATCTTCCATCCCCTCAAGTCTCTGGGCCGCATGGTGACCGACGCGCAGACGATCATGCCATTTAACTTTAGCGGAGCAACTCCTTTCTTCAGCCACAACAGCGCGATATTCCATGAACAGATCCTTAATGTGTCCAACATTCCGTACTTCCAGCACATCCAGCCTTCGCAAAGCGTGTACAACGCCAGACACGAGGACCAGAGCACTGGCTCACTGTCTGATTTCAGCAGCCCGTCCAGTGTAAAGTCTTCTTCGGCTTTATCTTCTCCGGTTAAGGACAATTTCAGCTGCCCGCAGGCCGCACATCCCACTCCCGAACACGCGCGCACCTACAGTTTTACAGAGGAGGACCTCTTTACCGTCCTGTACGGATATTCCAAAAAACAAGGACAAAATGCTGGACATGCTATTTCTGGATTATCATTTCCTCCCAGCACAGGCAAACTGGTAAACACAAGTGAGATCAAGACCTATGACGACAACACACTCATGTGGGAGATCTTTGAGAACGGCCGCTTGAGTCATTTTGTGGATGGAAGAGGCGCTCCAGGGAATTGGATGTCCTTGGTGAAGTGCGCGCGCTTTCCTGAAGAGCAGAACCTGATAGCGGTGCAGTGTGACGGACAGATATATTATGAGGCCTGCAAAGAGATCCGAGCCGGCCAAGAGCTGCTGGTTTGGTACGGAGATTGCTATGTGCAGTTTTTGGGTATTCCTCTCACCCTCAAAGAGTTCATTGATGACAGTGAAGCTCTCCCGGCAGAAGATTCTGGAGAGGGTTTCAAGTGTGATCGTTGTGGAAAAGTGTTCGCCTATAAGTACTATAGAGACAAACATCTGAAATACACGCGCTGTGTGGATCAGGGCGACAGAAAATTCCCCTGCCACCTCTGCAACAGATCTTTCGAGAAGAGAGATCGTCTTCGAATTCACATTCTCCATGTGCACGAGAAACACAGGCCACATAAGTGCTCCGTGTGCGGCAAAAGTTTCTCGCAGTCCTCCAGTCTGAACAAACACATGCGCGTGCACTCGGGAGAGCGGCCTTACAAATGTGTTTACTGTAACAAGGCGTTCACGGCCTCCAGCATCCTTCGCACACACATTCGCCAGCACTCCGGTGAGCGGCCGTTCAAGTGTAAACACTGCGGGAAAGCGTTCGCCTCTCACGCGGCCCACGACAGCCATGTCCGGCGGACACACGCCAAAGACAAGCAGCTCTCCTGTGATGTATGTGGGGCCACTTTCCAAGAGGCACAAGAGCTGAAATATCACATGAAGGCTCATAAAAAGCGGCCACTTTTGGAAAGCTCTGTTGTTCCTCCCGCTGACGAGAACGCGCTCTTCTCCACCAAAGAGTCTTTACACGCGCAGACACAGCTGGCGGACACTTTTTCTTTCCCCGGGATGACGAGCATCAGCTCCGAGTACAGACCCTGGAACTAA

Function

GO:

id name namespace
GO:0034972 histone H3-R26 methylation biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0019827 stem cell population maintenance biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044030 regulation of DNA methylation biological_process
GO:0007409 axonogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030131-2709 Predicted to enable RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within axonogenesis; regulation of DNA methylation; and stem cell population maintenance. Located in nucleus. Is expressed in several structures, including nervous system; neuroblasts; presumptive neural plate; spinal cord neural keel; and spinal cord neural tube. Orthologous to human PRDM14 (PR/SET domain 14).

Ensembl:

ensembl_id ENSDART00000066720

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046950 lncRNA upstream 372768 14055096 ~ 14078636 (+) True XLOC_022837
TCONS_00046949 lncRNA upstream 686600 13758700 ~ 13764804 (+) True XLOC_022835
TCONS_00046948 lncRNA upstream 851132 13355261 ~ 13600272 (+) True XLOC_022832
TCONS_00045375 lncRNA upstream 1496924 12953835 ~ 12954480 (+) True XLOC_022826
TCONS_00046947 lncRNA upstream 1597212 12853386 ~ 12854192 (+) True XLOC_022824
TCONS_00045405 lncRNA downstream 84986 14541089 ~ 14550613 (+) False XLOC_022843
TCONS_00045406 lncRNA downstream 85178 14541281 ~ 14549583 (+) False XLOC_022843
TCONS_00045407 lncRNA downstream 97212 14553315 ~ 14555354 (+) True XLOC_022843
TCONS_00046951 lncRNA downstream 126141 14582244 ~ 14585809 (+) True XLOC_022845
TCONS_00045432 lncRNA downstream 1693337 16149440 ~ 16164447 (+) True XLOC_022858
TCONS_00045399 mRNA upstream 6267 14302503 ~ 14445137 (+) False XLOC_022839
TCONS_00045398 mRNA upstream 6267 14302503 ~ 14445137 (+) True XLOC_022839
TCONS_00045397 mRNA upstream 6459 14240196 ~ 14444945 (+) False XLOC_022839
TCONS_00045396 mRNA upstream 216580 14214831 ~ 14234824 (+) True XLOC_022838
TCONS_00045395 mRNA upstream 503967 13932125 ~ 13947437 (+) True XLOC_022836
TCONS_00045403 mRNA downstream 71832 14527935 ~ 14532069 (+) True XLOC_022842
TCONS_00045404 mRNA downstream 84910 14541013 ~ 14557158 (+) False XLOC_022843
TCONS_00045408 mRNA downstream 125761 14581864 ~ 14597298 (+) False XLOC_022844
TCONS_00045409 mRNA downstream 139357 14595460 ~ 14601780 (+) False XLOC_022844
TCONS_00045410 mRNA downstream 139577 14595680 ~ 14600218 (+) False XLOC_022844
TCONS_00045400 other upstream 100384 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045390 other upstream 485465 13925066 ~ 13965939 (+) False XLOC_022836
TCONS_00045382 other upstream 1383024 13017659 ~ 13068380 (+) True XLOC_022829
TCONS_00045367 other upstream 2227744 12157404 ~ 12223660 (+) True XLOC_022818
TCONS_00045358 other upstream 2390052 12058002 ~ 12061352 (+) True XLOC_022814
TCONS_00045413 other downstream 167728 14623831 ~ 14636303 (+) True XLOC_022846
TCONS_00045414 other downstream 179200 14635303 ~ 14635419 (+) True XLOC_022847
TCONS_00045420 other downstream 564299 15020402 ~ 15044788 (+) False XLOC_022851
TCONS_00045423 other downstream 956886 15412989 ~ 15413105 (+) True XLOC_022853
TCONS_00045443 other downstream 1937424 16393527 ~ 16550549 (+) False XLOC_022862

Expression Profile

//