RNA id: TCONS_00046950


Basic Information

Item Value
RNA id TCONS_00046950
length 379
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_022837
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14055096 ~ 14078636 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGGAGACATGAGTCACTTACTGAGCGTCTTCACACCACGGCTTCAGTAAAAGGCCACAAGAAATGATGCGGTTCAGCGGGAGACAAGCGGGCCGGCGAGACGCTGGAATCCCAGGGCACATTCATCACCATTCACTCTTGCGTCCAAAACGCACTGGCTTCACTTTAAAGCCATAACCGGTCCAgtttaacacacacacgcacacacacacacacactgtggatAAAAGCCACCCTTCATGTTCTCTGACTCTAGATCTTAACATGACTGAACAAATAACCCTTGCTTTTTGGGGGGgcggcaatgtttttttttttttcttcactagaTATCTGgactgcttttgttttattttgctcagCATAGTTTTGTAGTTCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046949 lncRNA upstream 290292 13758700 ~ 13764804 (+) True XLOC_022835
TCONS_00046948 lncRNA upstream 454824 13355261 ~ 13600272 (+) True XLOC_022832
TCONS_00045375 lncRNA upstream 1100616 12953835 ~ 12954480 (+) True XLOC_022826
TCONS_00046947 lncRNA upstream 1200904 12853386 ~ 12854192 (+) True XLOC_022824
TCONS_00046801 lncRNA upstream 1762561 12291736 ~ 12292535 (+) False XLOC_022820
TCONS_00045405 lncRNA downstream 462453 14541089 ~ 14550613 (+) False XLOC_022843
TCONS_00045406 lncRNA downstream 462645 14541281 ~ 14549583 (+) False XLOC_022843
TCONS_00045407 lncRNA downstream 474679 14553315 ~ 14555354 (+) True XLOC_022843
TCONS_00046951 lncRNA downstream 503608 14582244 ~ 14585809 (+) True XLOC_022845
TCONS_00045432 lncRNA downstream 2070804 16149440 ~ 16164447 (+) True XLOC_022858
TCONS_00045394 mRNA upstream 39637 13925129 ~ 14015459 (+) False XLOC_022836
TCONS_00045393 mRNA upstream 39638 13925129 ~ 14015458 (+) False XLOC_022836
TCONS_00045391 mRNA upstream 41867 13925066 ~ 14013229 (+) False XLOC_022836
TCONS_00045392 mRNA upstream 41887 13925081 ~ 14013209 (+) False XLOC_022836
TCONS_00045389 mRNA upstream 41998 13869092 ~ 14013098 (+) False XLOC_022836
TCONS_00045396 mRNA downstream 136195 14214831 ~ 14234824 (+) True XLOC_022838
TCONS_00045397 mRNA downstream 161560 14240196 ~ 14444945 (+) False XLOC_022839
TCONS_00045399 mRNA downstream 223867 14302503 ~ 14445137 (+) False XLOC_022839
TCONS_00045398 mRNA downstream 223867 14302503 ~ 14445137 (+) True XLOC_022839
TCONS_00045402 mRNA downstream 372768 14451404 ~ 14456103 (+) False XLOC_022841
TCONS_00045390 other upstream 89157 13925066 ~ 13965939 (+) False XLOC_022836
TCONS_00045382 other upstream 986716 13017659 ~ 13068380 (+) True XLOC_022829
TCONS_00045367 other upstream 1831436 12157404 ~ 12223660 (+) True XLOC_022818
TCONS_00045358 other upstream 1993744 12058002 ~ 12061352 (+) True XLOC_022814
TCONS_00045354 other upstream 2430229 11622196 ~ 11624867 (+) False XLOC_022810
TCONS_00045400 other downstream 272264 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045413 other downstream 545195 14623831 ~ 14636303 (+) True XLOC_022846
TCONS_00045414 other downstream 556667 14635303 ~ 14635419 (+) True XLOC_022847
TCONS_00045420 other downstream 941766 15020402 ~ 15044788 (+) False XLOC_022851
TCONS_00045423 other downstream 1334353 15412989 ~ 15413105 (+) True XLOC_022853

Expression Profile

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