RNA id: TCONS_00045358


Basic Information

Item Value
RNA id TCONS_00045358
length 890
RNA type processed_transcript
GC content 0.43
exon number 6
gene id XLOC_022814
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12055030 ~ 12061352 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtgGTACAAAAGACCAGAGTAAAGCCACGATGTTTCACATTGTTGTTTTTGACAAAACTAATGAGGTAGAAGTTGTGCCTTCCATCTGGATTAAAAATGGAGAGTGCTTGTGGCCTCCAAATAAAACTGATATAGCCAAAGCTGTCAGATTGCAAGATTGTCCTGGAGACGAATGGAAAGCCCATAAGGCCAGAATTATCTTCACTTCACATGACTACAATGAAGCAAGACGAAAATTACCCCAAGCTGTTGAACAGACTGATGTTGGAAGTGATGAGGGGAACTAACCACGtgcttttaaaagaaaaagaatGCCTAAAAACAATCTATTGCCTGGGGAGGATGATTCAGAGACAGAAAGCATtgtgaaagaaaaaaagtcaaaaaaaagGAAAATATTCATTGCCCAATGCTCCAAAAATCATCAAGCAGCACAAAACTTTAGCAGTAAACCCAGTAAAGGAAAACAGTCCAGGGTTCAACCCAACAGGCCGCATCACTGCTGTTTGTCACTATGATGACATGGAAGGCAGCGTGGAAGGAACAAAGTCACAAAACAGAAACTTTTCATTGCCCAATGCTAGGAGTATTGCTAGATAGGACAACACTAATGAGTTAGAACCAGGAAAGCAAAGCAGCCCCAAGCTCCAAGTACTCAATCAAACCACTCCTTCCCACCACCTAAAGGGCCACATCACTTCTTACGACTATGAAAGAGGCCACAGCAGTCCTGAGCTTTTTCCAAGTGATGATAGTACTCCTGAGCTTTACTTAAAAGGGCACAGCACTCCTAAACTTTACTCAAGAGGCTGCAGCAGTCCTAATCTCTACTCCGGAGGCCATAGCAGTGATCACTTTTACCCAAGAGGACACAACAGCCAAAAGCTCC

Function

GO:

id name namespace
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0016070 RNA metabolic process biological_process
GO:0007492 endoderm development biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0006366 transcription by RNA polymerase II biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0010467 gene expression biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000172250

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046945 lncRNA upstream 99869 11956998 ~ 11958133 (+) True XLOC_022813
TCONS_00046798 lncRNA upstream 114674 11942864 ~ 11943328 (+) True XLOC_022812
TCONS_00046944 lncRNA upstream 137446 11919526 ~ 11920556 (+) True XLOC_022811
TCONS_00046796 lncRNA upstream 459473 11597090 ~ 11598529 (+) False XLOC_022808
TCONS_00046797 lncRNA upstream 459843 11597292 ~ 11598159 (+) True XLOC_022808
TCONS_00046799 lncRNA downstream 34178 12095530 ~ 12102138 (+) True XLOC_022816
TCONS_00045362 lncRNA downstream 68374 12129726 ~ 12132445 (+) True XLOC_022817
TCONS_00045366 lncRNA downstream 96052 12157404 ~ 12196621 (+) False XLOC_022818
TCONS_00046801 lncRNA downstream 230384 12291736 ~ 12292535 (+) False XLOC_022820
TCONS_00046800 lncRNA downstream 230384 12291736 ~ 12292535 (+) True XLOC_022820
TCONS_00045357 mRNA upstream 136818 11908833 ~ 11921184 (+) False XLOC_022811
TCONS_00045356 mRNA upstream 138711 11908480 ~ 11919291 (+) False XLOC_022811
TCONS_00045350 mRNA upstream 667333 11381400 ~ 11390669 (+) True XLOC_022805
TCONS_00045347 mRNA upstream 711131 11334733 ~ 11346871 (+) False XLOC_022804
TCONS_00045348 mRNA upstream 711745 11334781 ~ 11346257 (+) False XLOC_022804
TCONS_00045359 mRNA downstream 12988 12074340 ~ 12083352 (+) False XLOC_022815
TCONS_00045360 mRNA downstream 13014 12074366 ~ 12082819 (+) False XLOC_022815
TCONS_00045361 mRNA downstream 13657 12075009 ~ 12085001 (+) True XLOC_022815
TCONS_00045363 mRNA downstream 72462 12133814 ~ 12252626 (+) False XLOC_022818
TCONS_00045364 mRNA downstream 72502 12133854 ~ 12252391 (+) False XLOC_022818
TCONS_00045354 other upstream 433135 11622196 ~ 11624867 (+) False XLOC_022810
TCONS_00045353 other upstream 434080 11622196 ~ 11623922 (+) False XLOC_022810
TCONS_00045355 other upstream 434581 11622575 ~ 11623421 (+) True XLOC_022810
TCONS_00045352 other upstream 443629 11614257 ~ 11614373 (+) True XLOC_022809
TCONS_00045351 other upstream 491560 11564896 ~ 11566442 (+) True XLOC_022807
TCONS_00045367 other downstream 96052 12157404 ~ 12223660 (+) True XLOC_022818
TCONS_00045382 other downstream 956307 13017659 ~ 13068380 (+) True XLOC_022829
TCONS_00045390 other downstream 1863714 13925066 ~ 13965939 (+) False XLOC_022836
TCONS_00045400 other downstream 2289548 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045413 other downstream 2562479 14623831 ~ 14636303 (+) True XLOC_022846

Expression Profile

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