RNA id: TCONS_00046799


Basic Information

Item Value
RNA id TCONS_00046799
length 417
lncRNA type inter_gene
GC content 0.34
exon number 2
gene id XLOC_022816
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12095530 ~ 12102138 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tgatacatgaggcccctcgTCCTCATGTTCTTTCCTCCCTTTATAATGTGCTCTCTTCCCTCATGCCTTCGTCGGTTCATTGTTGCATGTTACTTCTTGCCACTTGTTTCATGTTGTTGCCATTCTGTGCTTGTTTATCTGTGCTGTTGTTTGTGAGAGAGTTGTCTTTGTCTaacgtttgtttttttcagTTGGCCTTCAGTATCATCCCCATCTGGTTAATCCTTTtcaagtttgttttgtttaagaTATTCTATTTATCTTATTTCGTAGCTTTAAGTGTTTAATTCCCTTttattggttttgtttatttcagttaattATCAGTAAGTTAAAAGCTAATTTCATTTCTCTTTGCTTTTTAGTTTGTCAATAGTTTCTGTATcttagttagttatttagtttatgattttgttt

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046946 lncRNA upstream 35076 12055030 ~ 12060454 (+) False XLOC_022814
TCONS_00046945 lncRNA upstream 137397 11956998 ~ 11958133 (+) True XLOC_022813
TCONS_00046798 lncRNA upstream 152202 11942864 ~ 11943328 (+) True XLOC_022812
TCONS_00046944 lncRNA upstream 174974 11919526 ~ 11920556 (+) True XLOC_022811
TCONS_00046796 lncRNA upstream 497001 11597090 ~ 11598529 (+) False XLOC_022808
TCONS_00045362 lncRNA downstream 27588 12129726 ~ 12132445 (+) True XLOC_022817
TCONS_00045366 lncRNA downstream 55266 12157404 ~ 12196621 (+) False XLOC_022818
TCONS_00046801 lncRNA downstream 189598 12291736 ~ 12292535 (+) False XLOC_022820
TCONS_00046800 lncRNA downstream 189598 12291736 ~ 12292535 (+) True XLOC_022820
TCONS_00046947 lncRNA downstream 751248 12853386 ~ 12854192 (+) True XLOC_022824
TCONS_00045361 mRNA upstream 10529 12075009 ~ 12085001 (+) True XLOC_022815
TCONS_00045359 mRNA upstream 12178 12074340 ~ 12083352 (+) False XLOC_022815
TCONS_00045360 mRNA upstream 12711 12074366 ~ 12082819 (+) False XLOC_022815
TCONS_00045357 mRNA upstream 174346 11908833 ~ 11921184 (+) False XLOC_022811
TCONS_00045356 mRNA upstream 176239 11908480 ~ 11919291 (+) False XLOC_022811
TCONS_00045363 mRNA downstream 31676 12133814 ~ 12252626 (+) False XLOC_022818
TCONS_00045364 mRNA downstream 31716 12133854 ~ 12252391 (+) False XLOC_022818
TCONS_00045365 mRNA downstream 31716 12133854 ~ 12253332 (+) False XLOC_022818
TCONS_00045368 mRNA downstream 98122 12200260 ~ 12201622 (+) True XLOC_022819
TCONS_00045369 mRNA downstream 588025 12690163 ~ 12734583 (+) True XLOC_022821
TCONS_00045358 other upstream 34178 12058002 ~ 12061352 (+) True XLOC_022814
TCONS_00045354 other upstream 470663 11622196 ~ 11624867 (+) False XLOC_022810
TCONS_00045353 other upstream 471608 11622196 ~ 11623922 (+) False XLOC_022810
TCONS_00045355 other upstream 472109 11622575 ~ 11623421 (+) True XLOC_022810
TCONS_00045352 other upstream 481157 11614257 ~ 11614373 (+) True XLOC_022809
TCONS_00045367 other downstream 55266 12157404 ~ 12223660 (+) True XLOC_022818
TCONS_00045382 other downstream 915521 13017659 ~ 13068380 (+) True XLOC_022829
TCONS_00045390 other downstream 1822928 13925066 ~ 13965939 (+) False XLOC_022836
TCONS_00045400 other downstream 2248762 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045413 other downstream 2521693 14623831 ~ 14636303 (+) True XLOC_022846

Expression Profile

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