Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00045393 |
| length | 4414 |
| RNA type | mRNA |
| GC content | 0.43 |
| exon number | 19 |
| gene id | XLOC_022836 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007135.7 |
| NCBI id | CM002908.2 |
| chromosome length | 42172926 |
| location | 13869092 ~ 14015459 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0045739 | positive regulation of DNA repair | biological_process |
| GO:2001240 | negative regulation of extrinsic apoptotic signaling pathway in absence of ligand | biological_process |
| GO:0030154 | cell differentiation | biological_process |
| GO:0071600 | otic vesicle morphogenesis | biological_process |
| GO:0042471 | ear morphogenesis | biological_process |
| GO:0042472 | inner ear morphogenesis | biological_process |
| GO:0009887 | animal organ morphogenesis | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0048840 | otolith development | biological_process |
| GO:0035335 | peptidyl-tyrosine dephosphorylation | biological_process |
| GO:0048856 | anatomical structure development | biological_process |
| GO:0016576 | histone dephosphorylation | biological_process |
| GO:0021984 | adenohypophysis development | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0004721 | phosphoprotein phosphatase activity | molecular_function |
| GO:0004725 | protein tyrosine phosphatase activity | molecular_function |
| id | description |
|---|---|
| ko05202 | Transcriptional misregulation in cancer |
| ko01009 | Protein phosphatases and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-990712-18 | Predicted to enable protein tyrosine phosphatase activity. Acts upstream of or within adenohypophysis development; otic vesicle morphogenesis; and otolith development. Predicted to be active in nucleus. Is expressed in several structures, including adenohypophyseal placode; brain; ectoderm; head; and lateral line system. Human ortholog(s) of this gene implicated in branchiootorenal syndrome and branchiootorenal syndrome 1. Orthologous to human EYA1 (EYA transcriptional coactivator and phosphatase 1). |
| ensembl_id | ENSDART00000081595 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00046949 | lncRNA | upstream | 160325 | 13758700 ~ 13764804 (+) | True | XLOC_022835 |
| TCONS_00046948 | lncRNA | upstream | 324857 | 13355261 ~ 13600272 (+) | True | XLOC_022832 |
| TCONS_00045375 | lncRNA | upstream | 970649 | 12953835 ~ 12954480 (+) | True | XLOC_022826 |
| TCONS_00046947 | lncRNA | upstream | 1070937 | 12853386 ~ 12854192 (+) | True | XLOC_022824 |
| TCONS_00046800 | lncRNA | upstream | 1632594 | 12291736 ~ 12292535 (+) | True | XLOC_022820 |
| TCONS_00046950 | lncRNA | downstream | 39638 | 14055096 ~ 14078636 (+) | True | XLOC_022837 |
| TCONS_00045405 | lncRNA | downstream | 525631 | 14541089 ~ 14550613 (+) | False | XLOC_022843 |
| TCONS_00045406 | lncRNA | downstream | 525823 | 14541281 ~ 14549583 (+) | False | XLOC_022843 |
| TCONS_00045407 | lncRNA | downstream | 537857 | 14553315 ~ 14555354 (+) | True | XLOC_022843 |
| TCONS_00046951 | lncRNA | downstream | 566786 | 14582244 ~ 14585809 (+) | True | XLOC_022845 |
| TCONS_00045388 | mRNA | upstream | 183505 | 13735616 ~ 13741624 (+) | True | XLOC_022834 |
| TCONS_00045385 | mRNA | upstream | 209368 | 13635108 ~ 13715761 (+) | False | XLOC_022833 |
| TCONS_00045386 | mRNA | upstream | 211021 | 13635387 ~ 13714108 (+) | False | XLOC_022833 |
| TCONS_00045387 | mRNA | upstream | 211675 | 13642126 ~ 13713454 (+) | True | XLOC_022833 |
| TCONS_00045384 | mRNA | upstream | 587980 | 13316737 ~ 13337149 (+) | True | XLOC_022831 |
| TCONS_00045396 | mRNA | downstream | 199373 | 14214831 ~ 14234824 (+) | True | XLOC_022838 |
| TCONS_00045397 | mRNA | downstream | 224738 | 14240196 ~ 14444945 (+) | False | XLOC_022839 |
| TCONS_00045399 | mRNA | downstream | 287045 | 14302503 ~ 14445137 (+) | False | XLOC_022839 |
| TCONS_00045398 | mRNA | downstream | 287045 | 14302503 ~ 14445137 (+) | True | XLOC_022839 |
| TCONS_00045402 | mRNA | downstream | 435946 | 14451404 ~ 14456103 (+) | False | XLOC_022841 |
| TCONS_00045382 | other | upstream | 856749 | 13017659 ~ 13068380 (+) | True | XLOC_022829 |
| TCONS_00045367 | other | upstream | 1701469 | 12157404 ~ 12223660 (+) | True | XLOC_022818 |
| TCONS_00045358 | other | upstream | 1863777 | 12058002 ~ 12061352 (+) | True | XLOC_022814 |
| TCONS_00045354 | other | upstream | 2300262 | 11622196 ~ 11624867 (+) | False | XLOC_022810 |
| TCONS_00045400 | other | downstream | 335442 | 14350900 ~ 14351020 (+) | True | XLOC_022840 |
| TCONS_00045413 | other | downstream | 608373 | 14623831 ~ 14636303 (+) | True | XLOC_022846 |
| TCONS_00045414 | other | downstream | 619845 | 14635303 ~ 14635419 (+) | True | XLOC_022847 |
| TCONS_00045420 | other | downstream | 1004944 | 15020402 ~ 15044788 (+) | False | XLOC_022851 |
| TCONS_00045423 | other | downstream | 1397531 | 15412989 ~ 15413105 (+) | True | XLOC_022853 |
