RNA id: TCONS_00045375


Basic Information

Item Value
RNA id TCONS_00045375
length 437
lncRNA type retained_intron
GC content 0.41
exon number 3
gene id XLOC_022826
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12945803 ~ 12954482 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAGGGTaaaaaacagttttgttgtttccTCAGGTACTACAGTGAGAGAGGAGACGCTGTAGCCAAGGCTTCCAAACAGCCACATGTGGGAGATTTCCGACAGCTTGTTCATGAACTGGATCAGCACCAGTATTGTGAGTTACGCATCATAGTTCTGGAGATTCGCAACACTTACGCCATGCTGTATGATGTCATCACCAAGAACTTTGACAAGATTAAGAAGCCCAGGGGAGACTTATCTTCAAAAGCACTTATCTACTGAGCAACCAGGCTGATGTGCACTGAAatcacacacgcaaacacacacacatttactgaaAAGTAAAACATGCCGTATTGAGTTTCATAACCACAGTCACAGTGCAGTGACTTGAGATACGATTACATCAACAGAATGTGctgtattacagtttttaattcaataaatagTTTAGGCTA

Function

GO:

id name namespace
GO:0061136 regulation of proteasomal protein catabolic process biological_process
GO:0010950 positive regulation of endopeptidase activity biological_process
GO:2000045 regulation of G1/S transition of mitotic cell cycle biological_process
GO:0008537 proteasome activator complex cellular_component
GO:0005654 nucleoplasm cellular_component
GO:0000502 proteasome complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0061133 endopeptidase activator activity molecular_function

KEGG:

id description
ko03050 Proteasome
ko04612 Antigen processing and presentation
ko03051 Proteasome

ZFIN:

id description
ZDB-GENE-991110-17 Predicted to enable endopeptidase activator activity. Predicted to be involved in positive regulation of endopeptidase activity; regulation of G1/S transition of mitotic cell cycle; and regulation of proteasomal protein catabolic process. Predicted to be part of proteasome activator complex. Predicted to be active in cytoplasm and nucleoplasm. Orthologous to human PSME1 (proteasome activator subunit 1).

Ensembl:

ensembl_id ENSDART00000133925

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046947 lncRNA upstream 99643 12853386 ~ 12854192 (+) True XLOC_022824
TCONS_00046801 lncRNA upstream 661300 12291736 ~ 12292535 (+) False XLOC_022820
TCONS_00046800 lncRNA upstream 661300 12291736 ~ 12292535 (+) True XLOC_022820
TCONS_00045366 lncRNA upstream 757214 12157404 ~ 12196621 (+) False XLOC_022818
TCONS_00045362 lncRNA upstream 821390 12129726 ~ 12132445 (+) True XLOC_022817
TCONS_00046948 lncRNA downstream 400781 13355261 ~ 13600272 (+) True XLOC_022832
TCONS_00046949 lncRNA downstream 804220 13758700 ~ 13764804 (+) True XLOC_022835
TCONS_00046950 lncRNA downstream 1100616 14055096 ~ 14078636 (+) True XLOC_022837
TCONS_00045405 lncRNA downstream 1586609 14541089 ~ 14550613 (+) False XLOC_022843
TCONS_00045406 lncRNA downstream 1586801 14541281 ~ 14549583 (+) False XLOC_022843
TCONS_00045372 mRNA upstream 35505 12894282 ~ 12918330 (+) False XLOC_022825
TCONS_00045373 mRNA upstream 38802 12913329 ~ 12915033 (+) True XLOC_022825
TCONS_00045371 mRNA upstream 111732 12835935 ~ 12842103 (+) True XLOC_022823
TCONS_00045370 mRNA upstream 201333 12740848 ~ 12752502 (+) True XLOC_022822
TCONS_00045369 mRNA upstream 219252 12690163 ~ 12734583 (+) True XLOC_022821
TCONS_00045376 mRNA downstream 28954 12983434 ~ 12988846 (+) False XLOC_022827
TCONS_00045377 mRNA downstream 28970 12983450 ~ 12988847 (+) False XLOC_022827
TCONS_00045378 mRNA downstream 28978 12983458 ~ 12988849 (+) True XLOC_022827
TCONS_00045379 mRNA downstream 35247 12989727 ~ 13016024 (+) False XLOC_022828
TCONS_00045380 mRNA downstream 35311 12989791 ~ 13013790 (+) True XLOC_022828
TCONS_00045367 other upstream 730175 12157404 ~ 12223660 (+) True XLOC_022818
TCONS_00045358 other upstream 892483 12058002 ~ 12061352 (+) True XLOC_022814
TCONS_00045354 other upstream 1328968 11622196 ~ 11624867 (+) False XLOC_022810
TCONS_00045353 other upstream 1329913 11622196 ~ 11623922 (+) False XLOC_022810
TCONS_00045382 other downstream 63179 13017659 ~ 13068380 (+) True XLOC_022829
TCONS_00045390 other downstream 970586 13925066 ~ 13965939 (+) False XLOC_022836
TCONS_00045400 other downstream 1396420 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045413 other downstream 1669351 14623831 ~ 14636303 (+) True XLOC_022846
TCONS_00045414 other downstream 1680823 14635303 ~ 14635419 (+) True XLOC_022847

Expression Profile

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