RNA id: TCONS_00045370


Basic Information

Item Value
RNA id TCONS_00045370
length 714
RNA type mRNA
GC content 0.50
exon number 3
gene id XLOC_022822
representative True

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 12740848 ~ 12752502 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGCTTCCGTCTCCATCTGATCCCACTGAATCTCAAGTCTGACTTGTAGACAGCAGTCAGACTTATTATTTCACCCGGAGAGAAAATCAGAGGAATTGACTCAATGATTATAGACGAAAGAAAAGACAATACTGAGCAGCAACGCAAGCTGGCAGGACTGGAAAAACACCCAGAGGTCCAGCATGGGGTTGAGTCCCAAGAGAAGCAGATGAACGGCGATGTcccattaaattccatcatcaATGACAAAATGAAACGAGCCGATCTGGACTGGACAGTTCCCATGGTTGTGCACCTGCCCATTGCAGTTCTGAACCACGAGCAGGCATTCCCCTTCCTGAACACCACACTTGCTGACCTGGGGATTGATGAATCAGCTGTGAAGGAGCGTGTGGTGTGGGTGGACTCAAAGCGCACACAGGTAAAGGGAAAATCTGGGAAGCTGAAGGAGAAAGAGGTGACGCTTCTAGAGATGCGGGTGAAAGCGCAGCATCCTGGAGAACGTCAGAGTCAGGAGGTGATTTACAGCACTGAGTCTCACACTGACCGCTCATTCTGCAGAAGCGGAGTGGACATCCAGCCGTGGAGACACACACAGCCAGctGAAAATGAACTCCAGCCGGTAGAAATGACTCTGCCTTTGGACACAGCATCTGAATCCAAGACCAAAGGCCAGAAAACCCAAGAAAAGTTTGACTTGCCAGGAGAGAAGTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-041014-306 No description available

Ensembl:

ensembl_id ENSDART00000060825

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046801 lncRNA upstream 448313 12291736 ~ 12292535 (+) False XLOC_022820
TCONS_00046800 lncRNA upstream 448313 12291736 ~ 12292535 (+) True XLOC_022820
TCONS_00045366 lncRNA upstream 544227 12157404 ~ 12196621 (+) False XLOC_022818
TCONS_00045362 lncRNA upstream 608403 12129726 ~ 12132445 (+) True XLOC_022817
TCONS_00046799 lncRNA upstream 638710 12095530 ~ 12102138 (+) True XLOC_022816
TCONS_00046947 lncRNA downstream 100884 12853386 ~ 12854192 (+) True XLOC_022824
TCONS_00045375 lncRNA downstream 201333 12953835 ~ 12954480 (+) True XLOC_022826
TCONS_00046948 lncRNA downstream 602759 13355261 ~ 13600272 (+) True XLOC_022832
TCONS_00046949 lncRNA downstream 1006198 13758700 ~ 13764804 (+) True XLOC_022835
TCONS_00046950 lncRNA downstream 1302594 14055096 ~ 14078636 (+) True XLOC_022837
TCONS_00045369 mRNA upstream 6265 12690163 ~ 12734583 (+) True XLOC_022821
TCONS_00045365 mRNA upstream 487516 12133854 ~ 12253332 (+) False XLOC_022818
TCONS_00045363 mRNA upstream 488222 12133814 ~ 12252626 (+) False XLOC_022818
TCONS_00045364 mRNA upstream 488457 12133854 ~ 12252391 (+) False XLOC_022818
TCONS_00045368 mRNA upstream 539226 12200260 ~ 12201622 (+) True XLOC_022819
TCONS_00045371 mRNA downstream 83433 12835935 ~ 12842103 (+) True XLOC_022823
TCONS_00045372 mRNA downstream 141780 12894282 ~ 12918330 (+) False XLOC_022825
TCONS_00045373 mRNA downstream 160827 12913329 ~ 12915033 (+) True XLOC_022825
TCONS_00045374 mRNA downstream 193301 12945803 ~ 12954482 (+) False XLOC_022826
TCONS_00045376 mRNA downstream 230932 12983434 ~ 12988846 (+) False XLOC_022827
TCONS_00045367 other upstream 517188 12157404 ~ 12223660 (+) True XLOC_022818
TCONS_00045358 other upstream 679496 12058002 ~ 12061352 (+) True XLOC_022814
TCONS_00045354 other upstream 1115981 11622196 ~ 11624867 (+) False XLOC_022810
TCONS_00045353 other upstream 1116926 11622196 ~ 11623922 (+) False XLOC_022810
TCONS_00045382 other downstream 265157 13017659 ~ 13068380 (+) True XLOC_022829
TCONS_00045390 other downstream 1172564 13925066 ~ 13965939 (+) False XLOC_022836
TCONS_00045400 other downstream 1598398 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045413 other downstream 1871329 14623831 ~ 14636303 (+) True XLOC_022846
TCONS_00045414 other downstream 1882801 14635303 ~ 14635419 (+) True XLOC_022847

Expression Profile

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