XLOC_022843 (ngdn)


Basic Information

Item Value
gene id XLOC_022843
gene name ngdn
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14541013 ~ 14557158 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045404
ACGCTTTCCGTATCAACTTTGCTTAATTCAAAATGGCGGCCACCGCAGTTGGAAACGATGTTATAGACCGTGATCTTCCGACTGCTGTCCGTCTACTTAACAGTCTCACCGAACAGATTGTTTCAGTCACCAGTCATGTTCGGGAGCTTATAAAGAAAGTCAGAGAGAAAGCTTACCAGACTTCCAAGGGTTTGTCTTTTCTGGACTTGAGATATCATCTGTTACTGTTTTATCTGCAAGACATCACTCATTTGATCAGTTTGAAGACAGAAGGAGAAAGTCTGAAGGACAACAGTGCTATCCACAGACTGGTCACCATACGGACAGTTTTGGAGAAGATGCGCCCCCTTGATCAGAAGCTGAAATATCAAATAGATAAGTTAGTGCGGACGGCAGTGACAGGCAGTCTCTCTGAAAATGATCCTCTACACTTTCGCCCTAATCCTCAGAACCTGGTCAGCAAGCTCAGTGAGTCTGAGGATTCAGATGATGATGGTGTAGGaggaaaaacaaaggagcaaaaaGAGCCTTCAGGCGGCAGGAGATACGTACCTCCTCGAATTGCCCCAATGCATTATGATGGAGACCTAACAGAAGCAGATCGTCAAAAGGAGCGAGTGGAGAAGCAGAAGAGAGCAGCTCTGCGCAGCTCTGTCATTCAGGAGCTCCGGCAGCAGTACAGTGACGCTCCTGAGGAGATCCGAGACCGCAGAGACTTCCAGACCGACCGCCAAAGTAGAGAAGAGCTCAACAGGAAAAACTACGAGGAGTCCATGATGGTTCGTCTCAGTACAACACGAGATCAGAAGCTCAGGAAGAGGGGAATGATGGGAATGACATCACAGCTGAGTAACATCACACGATTCAGTGACATCACTGCTCTGACAGGAGGAGAAGTGCAGGATATTGGTAATCCAAAAcccaagaaaaagaaaataatcaaGAAAGGTAAAAAGAAAGttttcagaaaACGCAAGTAAACCAATGGCAAAGAgacaattgaataaaaaaaaattctctcctgGTTCAAAATTGTTGTTTGGGATTCTTTGTGTAAGCCATTGATGTCAGTCCTGATCAAACTAGTTTGATTTTTATGCCAATTAggtttctaataaaataaataaataaaataaataaatgaagtgagTGAGTGGTGTGTTTAAGCATGTTCTGTGGCAAACTGCTGATCCATTACATGGTTACAATTTAAGATTCCCAAATTGAGTATGAACATCCGTTACTTTTTCTCCCCCACCAGAACCTGTTGAGAACATAAGTGAATTTAAAACATGGTTGTTTAATTTCTGTGGCCTGATGagtgaaattaaaacattaaaactttCATTGTTATCTTGAGCACAATTCAGGTTGGAACAATTTAAATTTTTCAAATGTTAATAGCAAAGTTCATCAAAAAcagtgaaaatgtactcactcttACATCAGTCTAAACCACTTTCACTACATATTAATGGCCATTTCtttatctttgcatcaaattggAAACAAATTGTAAAACCTCAACTTGGTTACAAAGAAAAGAACTATGAGAAATTAAAACAATTTCAAGGTGTATAACTGAGGGCAGGCATTAAAAAATGAGTTCCAGAGACATGCAATTCTAAAAACAAGAGTCAATTGAAAGAACGACAGTTAAAAGAGTAACAATTACAAGATGCAAATTGTGAGAAAGTTGTACTTGGAGGGGGGATTCAATCCAGAAACAAATTAGGAAAGAACTGCAAGAAAGTCACAATTTGGTTAACAGAAAGATAATGCTGAGAAATACAGCAACATTCTAATCCTGTTTACGTCAAACAACTATTCTTTTCTCAGAACTGTGACTTAAACCTTGCAATTTTGAGGAAAAATGTTCAACAACTGAGAAGCTACATCTAGTAAGTGTCAGAATTTGAAATGTAGCCTTGCAACTGTGAGAACATCAGTGAGGAGATAAAACTAATTGCAATTCCACGAAACATTCCTTGTTTTCTGAAGAAAAGGAAAGTCATAAAGATTTGTAGTGAAACTAAATGAGTGAACATTTTTGGAAGAACTATTCCTTATGTTGGCATAAAAGACTTAACTGTtcactccaaaataaaaaaattgtcattcTCCCTTGACATGTTTCTATTGAAAACAAATCAGCCAATTGGTTACAATAGCCATTGGTACTTTTTCTTAATGTAAATTTCAATgactttccaacatttttcaaaatatctcgtTTTcgtcatgaaaaataaaaacagcgtttttactttaaattctcACAAATAAAAGGTACGAAGGCTgtcacacatttgtacttgaaagGTCCATAGTggtacctcaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatatatatatatataaaatgtatatatcagtacctacaaattttaagagaaacacttttgtactttttagttaCTAGTACGTACTCGAGGTATTAcggttttttccaattgtttacacacattttctgtaggcaggtctcatattgtcagaactctacacacaaatcacaaaacacacacacattgggcaaaactcttaaattcttctgcaaaatgaaactcttatgttcaaaacaatgtgatttcttctcaaatggtattttgttttcaaatgacacacacaagccatcaGAACAATAGACAATAAGAACAGTTGAACACTAATGTAAAACACAATgaccattcatcataatgacttactgtcagccttttttgttcagtgttacaaTTACTACAGACAGACAGTACataggcctacagaagtgcactgtaaaatattttaaaatattgttttatacaaaaGACATAAATACGaaatacattttactgtatttccCCCACAAAAACTGTGTACACAGTATTATGATCCAGATTCCAAttatgatccagatgagctctgatttctaaattgaaaTTCTGAGACAAGTGTTTTCTCATGTGATGAGTTATATGCTAGATAgggcaactgactttacaattgtgaatgacagtgtgtttcttgtgaaaacaaaagattttctgcatgaaacttgtgtaaaatgcagagaattgtgtgtagtgttttggaaaaagtgtgttgtaaacctgcaatttgagtgtaaagcaggaattgtgcttgtagtttagcagaattggttcaaggggttggtgcatcagtcaCATGTTGTAGAAATTGTGTCTGTAGTACAAGTAATTGAGTGTAAacaactaagaaaaactgtaa
>TCONS_00045405
tttctttattctttaGTCAAACCTAAACATAGACGATTGAAGTTtagtattttattacatttctatTATACTGTCAtttaatgtacttttattttCCAGTTAAGATGAGTAAAACTGGACATTGGATTACACGATAGCCTTTTagaaatttatttacttttgtatatttatttatttatttattgcttgtaGGATGTTATAGACCGTGATCTTCCGACTGCTGTCCGTCTACTTAACAGTCTCACCGAACAGATTGTTTCAGTCACCAGTCATGTTCGGGAGCTTATAAAGAAAGTCAGAGAGAAAGCTTACCAGACTTCCAAGGGTTTGTCTTTTCTGGACTTGAGATATCATCTGTTACTGTTTTATCTGCAAGACATCACTCATTTGATCAGTTTGAAGACAGAAGGAGAAAGTCTGAAGGACAACAGTGCTATCCACAGACTGGTCACCATACGGACAGTTTTGGAGAAGATGCGCCCCCTTGATCAGAAGCTGAAATATCAAATAGATAAGTTAGTGCGGACGGCAGTGACAGGCAGTCTCTCTGAAAATGATCCTCTACACTTTCGCCCTAATCCTCAGAACCTGGTCAGCAAGCTCAGTGAGTCTGAGGATTCAGATGATGATGGTGTAGGaggaaaaacaaaggagcaaaaaGAGCCTTCAGGCGGCAGGAGATACGTACCTCCTCGAATTGCCCCAATGCATTATGATGGAGACCTAACAGAAGCAGATCGTCAAAAGGAGCGAGTGGAGAAGCAGAAGAGAGCAGCTCTGCGCAGCTCTGTCATTCAGGAGCTCCGGCAGCAGTACAGTGACGCTCCTGAGGAGATCCGAGACCGCAGAGACTTCCAGACCGACCGCCAAAGTAGAGAAGAGCTCAACAG
>TCONS_00045406
GATGTTATAGACCGTGATCTTCCGACTGCTGTCCGTCTACTTAACAGTCTCACCGAACAGATTGTTTCAGTCACCAGTCATGTTCGGGAGCTTATAAAGAAAGTCAGAGAGAAAGCTTACCAGACTTCCAAGGGTTTGTCTTTTCTGGACTTGAGATATCATCTGTTACTGTTTTATCTGCAAGACATCACTCATTTGATCAGTTTGAAGACAGAAGGAGAAAGTCTGAAGGACAACAGTGCTATCCACAGACTGGTCACCATACGGACAGTTTTGGAGAAGATGCGCCCCCTTGATCAGAAGCTGAAATATCAAATAGATAAGTTAGTGCGGACGGCAGTGACAGGCAGTCTCTCTGAAAATGATCCTCTACACTTTCGCCCTAATCCTCAGAACCTGGTCAGCAAGGTAAAACTCTTATGCAGTAATAGTAAGCAATATGTatggtggccaagagagcttaaaCACACTGCAAGTAAAGAGATTTCTGAGATTATCAAGTTTTTGTCACTTTTTGAGGTCAAGGGCAACATTTccgttgtggtctgtgctatttccAGCATGTTTCTCTTATTTGTATgtgatgtgaaatttaatttGTTGTCAAATTGATCAatttttct
>TCONS_00045407
CACGATTCAGTGACATCACTGCTCTGACAGGAGGAGAAGTGCAGGATATTGGTAATCCAAAAcccaagaaaaagaaaataatcaaGAAAGGTAAAAAGAAAGGTAAGTGTTTGATTTCTAAATATATGTATCCAGTGTTAATAAACGTTACATACCATattaaattaatgcttttttttttcagttttcagaaaACGCAAGTAAACCAATGGCAAAGAgacaattgaataaaaaaaaattctctcctgGTTCAAAATTGTTGTTTGGGATTCTTTGTGTAAGCCATTGATGTCAGTCCTGATCAAACTAGTTTGATTTTTATGCCAATTAggtttctaataaaataaataaataaaataaataaatgaagtgagTGAGTGGTGTGTTTAAGCATGTTCTGTGGCAAACTGCTGATCCATTACATGGTTACAATTTAAGATTCCCAAATTGAGTATGAACATCCGTTACTTTTTCTCCCCCACCAGAACCTGTTGAGAACATAAGTGAATTTAAAACATGGTTGTTTAATTTCTGTGGCCTGATGagtgaaattaaaacattaaaactttCATTGTTATCTTGAGCACAATTCAGGTTGGAACAATTTAAATTTTTCAAATGTTAATAGCAAAGTTCATCAAAAAcagtgaaaatgtactcactcttACATCAGTCTAAACCA

Function

symbol description
ngdn Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human NGDN (neuroguidin).

GO:

id name namespace
GO:0006417 regulation of translation biological_process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biological_process
GO:0032040 small-subunit processome cellular_component
GO:0005634 nucleus cellular_component
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-031030-13 Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Predicted to act upstream of or within regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human NGDN (neuroguidin).

Ensembl:

ensembl_id ENSDARG00000045372

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045404 False 3262 mRNA 0.36 11 14541013 14557158
TCONS_00045405 False 890 lncRNA 0.42 7 14541089 14550613
TCONS_00045406 False 623 lncRNA 0.41 5 14541281 14549583
TCONS_00045407 True 682 lncRNA 0.32 2 14553315 14555354

Neighbor

gene id symbol gene type direction distance location
XLOC_022842 si:dkeyp-73g8.5 coding upstream 8944 14527935 ~ 14532069 (+)
XLOC_022841 prdm14 coding upstream 84910 14451404 ~ 14456103 (+)
XLOC_022839 ncoa2 coding upstream 95876 14240196 ~ 14445137 (+)
XLOC_022840 BX248495.1 coding upstream 189993 14350900 ~ 14351020 (+)
XLOC_022838 tram1 coding upstream 306189 14214831 ~ 14234824 (+)
XLOC_022844 thtpa coding downstream 24706 14581864 ~ 14601780 (+)
XLOC_022845 NA coding downstream 25086 14582244 ~ 14585809 (+)
XLOC_022846 BX294113.1 coding downstream 66673 14623831 ~ 14636303 (+)
XLOC_022847 BX294113.3 coding downstream 78145 14635303 ~ 14635419 (+)
XLOC_022848 gdap1 coding downstream 156618 14713776 ~ 14725763 (+)
XLOC_022837 NA non-coding upstream 462377 14055096 ~ 14078636 (+)
XLOC_022835 NA non-coding upstream 776209 13758700 ~ 13764804 (+)
XLOC_022832 NA non-coding upstream 940741 13355261 ~ 13600272 (+)
XLOC_022824 NA non-coding upstream 1686821 12853386 ~ 12854192 (+)
XLOC_022853 BX640518.1 non-coding downstream 855831 15412989 ~ 15413105 (+)
XLOC_022859 NA non-coding downstream 1609607 16166765 ~ 16194730 (+)

Expression


Co-expression Network