XLOC_022845


Basic Information

Item Value
gene id XLOC_022845
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14582244 ~ 14585809 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00046951
TAGTGGTCAATTTTGGCACCATAAGGTTTGTAGTTCCAGACTCAAGCCCTCCCTGGCAATGGTCATCCTCTTCATCAGTGTGTTCAGACTCTGCTTGTACCTCTTCAACCTTCCTTTTTGGAGCAGATCGAGATGGATTGAATCACTGTCTTTTACCGTCCCGGTTCTCATTCTCTGAATATGGGTGGTTGAATTATAATGCACACTCAAAGCTGTTCTATTTGGAAATGACTCCAAACATGCATTACACTTGAATCGACTGTTATCAAATTCATAGGCTACACTGTTTTTGCAGACAGATCTGCCATTGCTTACAGATGCATCTGATGTCTTTATAGTTTGCTCCCCGTTGTCCTGATTTGACTCCAGATCCCCCATGTCAATTTCCTCATTTCTCCCTCCCTCAATTTCTTCATCCAGCTCTTTTTCCTCAGAAGAACCACATTTGTCAACTGCATCTGTAGATTCGTTCTCATTTTGGAAAGCCAGTGTGGGGGAATTTCTGTTCTCTGAATTCAGCTGAGATGTGTCATCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00046951 True 535 lncRNA 0.43 2 14582244 14585809

Neighbor

gene id symbol gene type direction distance location
XLOC_022843 ngdn coding upstream 25086 14541013 ~ 14557158 (+)
XLOC_022842 si:dkeyp-73g8.5 coding upstream 50175 14527935 ~ 14532069 (+)
XLOC_022841 prdm14 coding upstream 126141 14451404 ~ 14456103 (+)
XLOC_022839 ncoa2 coding upstream 137107 14240196 ~ 14445137 (+)
XLOC_022846 BX294113.1 coding downstream 38022 14623831 ~ 14636303 (+)
XLOC_022847 BX294113.3 coding downstream 49494 14635303 ~ 14635419 (+)
XLOC_022848 gdap1 coding downstream 127967 14713776 ~ 14725763 (+)
XLOC_022849 pi15a coding downstream 216035 14801844 ~ 14810634 (+)
XLOC_022850 crispld1a coding downstream 273429 14859238 ~ 14885354 (+)
XLOC_022840 BX248495.1 non-coding upstream 231224 14350900 ~ 14351020 (+)
XLOC_022837 NA non-coding upstream 503608 14055096 ~ 14078636 (+)
XLOC_022835 NA non-coding upstream 817440 13758700 ~ 13764804 (+)
XLOC_022832 NA non-coding upstream 981972 13355261 ~ 13600272 (+)
XLOC_022824 NA non-coding upstream 1728052 12853386 ~ 12854192 (+)
XLOC_022853 BX640518.1 non-coding downstream 827180 15412989 ~ 15413105 (+)
XLOC_022859 NA non-coding downstream 1580956 16166765 ~ 16194730 (+)
XLOC_022860 BX005275.2 non-coding downstream 1588390 16174199 ~ 16177300 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_00992108_01000450 ZFHX2 coding CI01000018 null 991446 ~ 1000450 (-)