XLOC_022838 (tram1)


Basic Information

Item Value
gene id XLOC_022838
gene name tram1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 14214831 ~ 14234824 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045396
AAAATTTGAAAAAGGATGGAAGAAGAAATACAGAAGTAGGCGTTAAGACTGACGTGCCTGCCAGATAACAATAGTGAAGACGTGTTCCTCACTCACACTAACTAAAAGTTCTCTCAACATCCACCAAGATGGGCATCCGAAAAAAGACCACCAAGAACCCGCCGGTGCTCAGCCATGAGTTTGTGATCCAGAACCACGCGGATATTGTGTCCTGTGTCGCTATGGTGTTTCTCCTGGGTCTTATGTTTGAGATTACATCAAAGGTAGCGGTTTTGTTCATAACTGTGCAATACAACGTCACGATTCCAGCAAATGGAGGTCCAGAGGAAGCGACAGTGAATTACTTTCATTATGGTCTGAAAGATGTGGCCACTATTTTCTTTTACATGTTGGTGGCCATTATCATGCACGCCATTATTCAGGAATATGTGCTGGATAAAATCAACAGGAAGATGCACTTCTCTAAAACCAAGCACAGCAAGTTCAATGAGTCGGGTCAGCTGAGTGCCTTCTACCTCTTCTCCTGCCTGTGGGGAGCCAGCATTCTTGTTTCTGAGAACATCCTCTCAAACCCTGTCAGCCTGTGGGATGGCTACCCACACACCCTAATGCAGTTCCAGATGAAGTTCTACTACATCTGTCAGCTCGGCTACTGGCTTCATGCAATCCCAGAGCTTTACTTCCAGAAGGCCAAGAAAgaagacATTCCTCGCCAGCTTGTTTATATAAGCCTTTACTTGGTCCACATCGCTGGAGCCTACGCTCTGAATCTGAACCGGTTGGGTTTGGTGTTGCTGGTTCTGCATTACTTTGTTGAGCTCATCTTCCATGTGTCCAGACTCATTTACTTCAGCAATGAGGAAAGGCAGAGTGGGTTTACAGTGTGGGCTGTTCTGTTTGTGCTGGGCCGGCTGTTGACTCTGTCTCTGTCTGTTCTTACTGTGGGCTTCGGCCTTGCAGGAGCAGAGAAACAGGGTTTGAATCTTGCAGAGGGAAGCTTTAATGTCCTGTTTGTGCGAGTGACCGTTCTGGCTGCCATATGCATCACTCAAGCTTTTATGATGTGGAAATTTATCAACTTCCAGTTGCGACGATGGAGAGAACAAGCACAGACTCAGACCTTAAAGAAGAAATCATCCTCTTCTAAGAGCAAATCAAAGAAAGCCAATGGTGTGAATGGATCTGTTGGAGCCAGCGGAGCAGATTCCCCCAGAGCGAGGAAGGAGAAGTCATCATAAACCTCCTGCATTCCCAGCTTCCCAAATCAGCACCATCATTCCTCTGCGTTTTCCCTTCACCCTCTTGTTTAtcagaaagaatgaaaaaaaaaaaaacttgcaacttCCTCATCCTGCTTCTTGATCCTGTAGGATGTCGAATGCCATATTTTACAAAGCCATTCAACTATTATGAGCGGCTTAATGAAATGTGGCTTTAGGGGATTTTGAAGAGGGTCTTTTTATTCCCTGCGCATTCTGAGGTCCATTTGctttctgccttttttttttttttgctaatgctGCAATCTCAAATCCCAAATCTATGATCCAGCCATACCTGCAAAGAAAACATGAGAACTGTGGGGGGCGGGAAAGAAAAgtaacttatttttttacaagTGCCTAATCATACATCATTTTGACAGGTCAGAGAGGGATAATCCAATATTTTAGCTTGAGTATAAAATCAGGGTTGTATTTAAAGTTCTCTGAAGGCTCAGTTTTTTGCTGATTCTGTCCTATGCATTTGGAACCACGTCTACAGTCTCTCCATTTGTGTTGTTGTGTTGAAGCATCATCagatttctagaaaaaaaaacgtTCATTAGCAAAAGATCACAAGCAAAGACATTCATCTGATGCCTTATTTTAGACAAGTTCATGAATTGCGTTTGTTGCACTGTATTGTGTAATTTGGTCGAGTTAAGCAATTAGTGTAATGCTCCACACATTGTTGATTTAGCAAAGAAACTAAAGCGATGTGCTTTTGATTTGTCAATAGATTCCACCATTTAATCTTGGACTTTGCACAGCTGACTTTGCTGTTTGGTGTAGATAACACATGAAAATGTCAAATCACATTCCAGTGAGATTGTGAAACTCTGGTCAAAATCGAAGGAAAAGTTCTCCTAATTTCTCAGTTTTGGCTTAAGAACAGCAATATGTAACAATGAAGAAAGGAACAAGCATTGTTATCTCACATTACTTTCAAAATACAACCAAGTTGACCAACAAGCAGTGAATACGTTAATAAATGTCGTTTTCAcagttatttgtttcatttcagtgCATTGCTTATGAAAATGTTTTCCGTTTTTGCGTATTTTAGTACTGCTTTGAAGTAAATCGCTTTACCGAAAATCAAACCGTTAGTTGTGACATCAAAACAAATTAAAGATGTCAAACAG

Function

symbol description
tram1 Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; digestive system; and hatching gland. Orthologous to several human genes including TRAM1 (translocation associated membrane protein 1).

GO:

id name namespace
GO:0006616 SRP-dependent cotranslational protein targeting to membrane, translocation biological_process
GO:0015031 protein transport biological_process
GO:0045048 protein insertion into ER membrane biological_process
GO:0061371 determination of heart left/right asymmetry biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04141 Protein processing in endoplasmic reticulum

ZFIN:

id description
ZDB-GENE-021011-1 Acts upstream of or within determination of heart left/right asymmetry. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Is expressed in several structures, including anterior axial hypoblast; axial mesoderm; axis; digestive system; and hatching gland. Orthologous to several human genes including TRAM1 (translocation associated membrane protein 1).

Ensembl:

ensembl_id ENSDARG00000019137

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045396 True 2407 mRNA 0.41 11 14214831 14234824

Neighbor

gene id symbol gene type direction distance location
XLOC_022837 NA coding upstream 136195 14055096 ~ 14078636 (+)
XLOC_022836 eya1 coding upstream 199372 13869092 ~ 14015459 (+)
XLOC_022835 NA coding upstream 450027 13758700 ~ 13764804 (+)
XLOC_022834 msc coding upstream 473207 13735616 ~ 13741624 (+)
XLOC_022833 trpa1b coding upstream 499070 13635108 ~ 13715761 (+)
XLOC_022839 ncoa2 coding downstream 5372 14240196 ~ 14445137 (+)
XLOC_022840 BX248495.1 coding downstream 116076 14350900 ~ 14351020 (+)
XLOC_022841 prdm14 coding downstream 216580 14451404 ~ 14456103 (+)
XLOC_022842 si:dkeyp-73g8.5 coding downstream 293111 14527935 ~ 14532069 (+)
XLOC_022843 ngdn coding downstream 306189 14541013 ~ 14557158 (+)
XLOC_022832 NA non-coding upstream 614559 13355261 ~ 13600272 (+)
XLOC_022824 NA non-coding upstream 1360639 12853386 ~ 12854192 (+)
XLOC_022820 NA non-coding upstream 1922296 12291736 ~ 12292535 (+)
XLOC_022845 NA non-coding downstream 347420 14582244 ~ 14585809 (+)
XLOC_022846 BX294113.1 non-coding downstream 389007 14623831 ~ 14636303 (+)
XLOC_022847 BX294113.3 non-coding downstream 400479 14635303 ~ 14635419 (+)
XLOC_022853 BX640518.1 non-coding downstream 1178165 15412989 ~ 15413105 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_00791508_00801917 TRAM1 coding CI01000018 null 791383 ~ 802946 (+)
bowfin (Amia calva) AMCG00019437 tram1,LOC107657822 coding CM030124.1 CM030124.1 20071779 ~ 20096454 (-)