RNA id: TCONS_00045385


Basic Information

Item Value
RNA id TCONS_00045385
length 5993
RNA type mRNA
GC content 0.41
exon number 28
gene id XLOC_022833
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 13635108 ~ 13715761 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGAAAGAAGCCACAAGACAATGGAAAgtgcacttatttttttttaaatacttttaatttttttctccagTTCTGGGAAATGGTAATTCATGAGCAACCACAGGCCATTGTCCAGACATTTACGTTTACATTACCCATAAGCATTTGAAGTTTAGAAATCTCATGCTAAATTAGCATGGCCCTTAATGAACGCATCAGATGACATTACCTCTGAGTGAGAGCCACTGTAACTGGATCTCCTTCAACCAACACTATAAAACCAGCTTCATACTGAGTgacggagagagaaagagagagcaagaCCACAGCACACAACTGCTCAACACACACATCAGCACATCCTCAGTCACTACGCTCACCAAATGCAGTTTGGAAAGGAGTTAGTGAGGCGAAACAGCTTCTACAAATGTGTGATAAACGAGGACGAAACGGAGGAGTCTGCAGATGTCTTTGAGTTGGCTTTCAAAGGAAAGGCTTCTGCCATCGATCGTCTGATCCAGAAAGGTCCAGAACACCTAAGCCTCAGGGATGAGAATGGAGCCAGTCTGCTGCACTATGCTTCAGCTGGAGGAAACCTGGATATCATTCGGCTCATTGTTTCCATTGTGGGCCCTGAGGTGCTGAATGTGCAGGATGAGCAGGGCCGAACTCCTCTGCACTGGGCTGTGGAGCAGGATCAACAACAGAGCTGCGCTGTACTGCTGGATCTGGGTGCTGACCCCAACATCCTCAACAATGCCCTGATGGGCCCTCTGCACCTGGCTGTCACCAAACAATACAATCATCTAGCAGAGGTCCTTCTGTCTTGTGACAAAACCAATAGCAATCTGGAGGGGGATCTGGGAAACACCCCTGTCATGCTGGCCTGCTCCAATAACAACTGCCAAGCTCTCCAGATCCTGATCAAGCGCGGTGCCAAGATGTGTATTCAGAACAAGCTGGGTCACTATCCCATTCATACTGTTGCTTTCGCAGGTGCCAAAGAGGCCATGGAGATGGTATTGAAAATTGGAGAAGAACTTGGTGTATCATCTACATTGCACATTAATTATTTGGATAAGTCCAAAAGCACACCTCTTCATCTGGCTGTACGCGGAGGCAATATCGAGGTGATCAAACTCTGCATCTTGAAAGGAGCCAAAGTAGAACAACATCAGAGTGGCAAATGCACGGCCCTCCACTTTGCCTGCAGTCAGGGTTCTCTGGAGGCTGTCAAAATCATGCTTTCCTCTTACAACAGAACAGAAGATATCGTCAACATTCGGGATGGAGCCAATCGGACACCTTTGCATAGAGCCACGCTGTTTGATCACGTTGAGTTGGCTGAATATCTTATTTCAAAGGGAGCAGAAATTGACTCTATTGACTGTAAGGGACTGTCTCCGCTTCTGCTCGCCTCCAGCTGCAGCGCTTGGAAAACAGTTGCATATCTGTTGTCCATTGGTGCAGATtttaaaatcaaagaaaaaacagGTCGCAACTTCCTCCACTTTGTTATTCTTCAACCTAAAGGCCTAAAAAATCTTCCTGAGACGGTTTTGCAGAGCACCGCCGTGAAGGAGATGTTGTCTGATGAGGATGTTGAAGGCTGCACTCCTCTGCACTACGCCTGCAAGCTTGGCATCCACGATTCGGTCAAAAATATGCTGGGTCTCAATATCTGCTTGGGTCAAAAGTCACGGGAGAAGAAATCAGCGCTTCACTTCGCTGCAGAATATGGGCGTATAAATACATGCCACCGGCTGCTGGAGACCCTCACAGACTCTAAAATGCTGAATGATTGGGATGAAAAGGGTCTGACGCCCCTCCATCTTGCTTCAAGGGCAGGACACGCTCAAGTAGTGGATCTGCTGCTTAGGAAGGGAGCACTGTTTCAAAGTGATTACAAGGGCTGGACCTGTTTACATCATGCAGCAGCTGAAGGATACACACAGACGATGAAAATCCTGCTGGCAGCCAATGTGAAACTACTAGATGAAAAAAATGAAGATGGGAACACAGCCCTTCATATAGCAGCACAAGCTGGACATGTAAGTGCTGTTTTGCTGTTATTGGACAGAGGAGCTGAAATCGCTCTCAACGATGCTGACAACTCTTTTTTGCATGAAGCTGTGCGGAATGAGAGAAGAGAAGTAGTGAACGCCACCATTGAACATGAGCGGTGTGATGAGTCAATGACGTCATTTAAAGCGAAATCCCGCTGTGTTGTGCTGGACATCATAGAGTTCCTCCCAGAATCTTTTCAGCACCTTTTGGACCAGTGTATTACAGAATCTGATCATGATGCCAATAGTCAGGATTATCATATCATGTACAATTTTCAATGGCTTCAGGCTCCCATACAGTTGAAGAAATATGctaaaacagacaaaacaaaagcaTTTCAACCACTGGCAGCATTGAATGCCATGGTGCGGTACAACCGTCTGGAGCTCCTCATTCACCCCTTGAGCCGAAAATACCTGGAGATGAAGTGGACGGCATATGGAAGCAAAGTTCATTTCCTAAACTTGGCGATATACCTGCTTGGATTGTTGCCCCTCACATACCTCATCCTCAATCTGAGACCCAGCCAGGACTTCTCCAAAGGCAATGGCACATCTGTCATCATGGTGCCCGTATCTTTTAGCGAGCAACAATATTTAATCTCCGTGTGTATAATCATGGTGATCGTCATGAATGTGTATTCGATTTGCAAAGAGGTGGTACAGTTGGCTCAGCAGCGAGTAAATTACTTCACAGATTTCTCAAACCCTGCGGACTGGAGTGCAGCTATTAGCGCTTTGGTTTTTGTTGTACCCATGTGCTGCAGTGTGGAGGCCACATGGCAATGGGAAGCTGGAGCTTATGCTATTCTGACTTCATGGATTGGCTTTCTGCTTTACTTTCAGAGATTTGAGCGGATTGGGATTTACGTGGTGATGTTTAATGGAATCGTACGGACCCTGGTGTGCATCATGGTTCTTTTTGTCTTCCTTTTGCTGGCTTTCGGCTTGGCTTTCTACGCTCTGATGCTCCACAGGCCGGAGTTCAGTTCCATCAGCCTAGCGTTAGCGCAAACGTTTGTGATGACAGTAGGAGAGCTAAACTACCAAAGCACATTTCTTAACTCCTATGAAGAAGGCCACATGGCTTTCCCAGCCATCACttatttagtttttgtgttttttgttcttCTCATGCCCATTCTTCTCATGAACCTAATGATTGGTTTGGCTGTAGGAGACATTGCAGAGGTACAGAGAAACGCAGAGCTGAAAAGGATTGCTATGCAGATAGATCTTCACACTGCCCTTGAGGAGAAACTACCTTACTGGTTCCTGAAGCGAGTGGACAAACCCTCTACCGTTGTCTATCCCAATAAATGCAAGAAAGTGCTTCTGGAGGCCTTGGTGCATGGTGAGATTCAGAACACAGTTCGAACTCGTCTAAACCTTTGCTCACGGAAGGAAGGGCTTTTGGAGAGAGAGCTGCACAAGCAGAAGAACAGGTTGAAAGAAATGTCGTGCATGCTGGAAAAACAGCATAACCTGTTGAAGCTGATTATCCAGAAGATGGAAATTACATCTGAAGCTGATGAATATGATGGTCCACAGAATCATGGAGCTCTAAAACAGCACACCTCATCCACCTCACAGAAATCAAAGTGGGTCCCGTTACTGCAAGCAATCAAGGCCAAGAAGTGACATCATAATGTACACATAAGCCATAATCAGCATTTTATTGTGATTTGATATGTTAGTTATAGTTTATAGTTAGTGTAGTTGTTTTTCCTCCCATCTTATGAactgtaaatgtataataatagtaTCATGATGTAGTTTAGAAGTTATAGCAATATTAATTTATTAGGAACAGTTATGGGTAATAACAGATTATGGATTATGTAATAAAACATTAAGTACTTGTAATTATACTAAAATTACCTAATTTATTAGTTCCTCTTGTTTATTCAATTGATTACATTTTAGCACAATGGTGGTAAAATATTCAGAATTCCTCAATCAGCCCTATTTTCTAATTTATGTCTTATGTCTGTTGTTCATTTAATGCAgcgaataaactttttttttttttttgccagataGACCTTTGGCAAAATTATCCTTAttcaagtctttttttaaattgtgtttatttgtaaataatgtattAGATTTCCATTTTGATGACTTAATATGATTATTGATTGGTTATAAAAAAATTTGGTAAAAAGTAATCCATTACTCAAAACAAGTAATGTAATCATGTAGATTAACTTGTTACTGTTgcaattttgtatgtttgtttcctGAATTACATCTTTACTTAATAGTTAGTAAATTATGAGGGtaatctctctctccctctctctcttgacttgtttactgttggttactaggttatcAATACTACAGTTAGCCCCTCTAATAACttcataaatatatacactgGATATCTcatacagaccctgagcatgcatcaatagtGCCGCCACATTTGCACTGTGCTCCcagcacaaatgtcattcaaccacactagtcaagactaaagccaatgtgaagatgccgGACTTTTGCTCTGTGTAAAGGTGTAGTTTtaagcaaattaagaaaacaaaaaagcatgcacagtggcctctcgcggatttgcaaaatgagcctgggttggataatACAATCAATTAGTGCACTGATCATAAGGAAGTAGCACAAATTCGCACTAAATaccaggcttatgctagtttggtTGAATAAAACCAGCAAactatgtaaatgaaatatgacaagacACCTTGGTGCCAGAAAcctgtattattgtcagctaagtgaaagagtcgttcataaTGAAGATTCCTTCACAAACGAATCGATCCCTctgttagaatgagaagtgaaagcaggagaggacacggattagatcaaatttaacagtgaagcaggataatacatttccatgcacacaaacacacactctctttgtTAGCAATACCCGTGCAGTCCCttatccatcgatgtagaaaagtgatgtaaaatgatagttttcaccataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatatatatatatatatatatatttgcatactgaccaccaggaaaattcccgatcatagatatatctatatatgtgtatatatctttcgctctggatggccagtccttcactgcaccttggtcccacatttatTTCAAAGGATCAGCACCCTGTACTAAGCGGCTCTATTGGCTCTATCCTTCCAATAAACCACAACAGGGTAGGCgtcatctaatgtaaatatatcTATGTAATAATTTGATGGAAACACACCCAATTCGTATTTGggattttttcaattttttctttgaaaaaaactcacttcatgGTTGGATGGAAACCCATCTATTGATAACTAGCTGGTCAGTAAATTTGTTATACGTAAATGTTGCAGCTACCTGAATGTTTCAATGAATTGAGCTGGGACAAATAATTTGACTCTTACATTGGTAAATTAATAAACTGTGCATATAGTTTAAAGAGCTAAAACATGGACTGACTACCAAATTCAGCTATACTGCGTTAGCAGCCTAAAAGTAATCAAAGGTAATCTGGTTATATAACCTAaattatgtaatcagattacattacaaactaatAACTAATTATGACTGATACGAGGCAGTATGGCACCGTTcgttttctcgcttaccagctgactgcttaccttcttatggaggcttttccactgttaccagtttttccCAGTAGCTCGACTTGTACATGGGCAGACTTGacacgcagagaggagttgactacaACTAGAGGTCTCGAGTTCAgtgaagagcagttccagaaagcaggtaagacaaaaacaaaaggcaaaaaagaaaataaattagtaaataacaaggtgagaatgtggaaaatcagaaaatctgaaaacatggtaaaaaagtttttctggattgctttataaaacactgcagttggTTTAGGGAAAAGGGTGAGTGG

Function

GO:

id name namespace
GO:0050907 detection of chemical stimulus involved in sensory perception biological_process
GO:0034220 ion transmembrane transport biological_process
GO:0050968 detection of chemical stimulus involved in sensory perception of pain biological_process
GO:0050974 detection of mechanical stimulus involved in sensory perception biological_process
GO:0007606 sensory perception of chemical stimulus biological_process
GO:0055085 transmembrane transport biological_process
GO:0007635 chemosensory behavior biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015267 channel activity molecular_function
GO:0015276 ligand-gated ion channel activity molecular_function
GO:0015278 calcium-release channel activity molecular_function
GO:0005216 ion channel activity molecular_function
GO:0008381 mechanosensitive ion channel activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050106-1 Enables calcium-release channel activity. Acts upstream of or within chemosensory behavior; detection of chemical stimulus involved in sensory perception of pain; and ion transmembrane transport. Predicted to be integral component of membrane. Is expressed in Rohon-Beard neurons and cranial ganglion. Human ortholog(s) of this gene implicated in familial episodic pain syndrome 1. Orthologous to human TRPA1 (transient receptor potential cation channel subfamily A member 1).

Ensembl:

ensembl_id ENSDART00000183008

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046948 lncRNA upstream 34836 13355261 ~ 13600272 (+) True XLOC_022832
TCONS_00045375 lncRNA upstream 680628 12953835 ~ 12954480 (+) True XLOC_022826
TCONS_00046947 lncRNA upstream 780916 12853386 ~ 12854192 (+) True XLOC_022824
TCONS_00046801 lncRNA upstream 1342573 12291736 ~ 12292535 (+) False XLOC_022820
TCONS_00046800 lncRNA upstream 1342573 12291736 ~ 12292535 (+) True XLOC_022820
TCONS_00046949 lncRNA downstream 42939 13758700 ~ 13764804 (+) True XLOC_022835
TCONS_00046950 lncRNA downstream 339335 14055096 ~ 14078636 (+) True XLOC_022837
TCONS_00045405 lncRNA downstream 825328 14541089 ~ 14550613 (+) False XLOC_022843
TCONS_00045406 lncRNA downstream 825520 14541281 ~ 14549583 (+) False XLOC_022843
TCONS_00045407 lncRNA downstream 837554 14553315 ~ 14555354 (+) True XLOC_022843
TCONS_00045384 mRNA upstream 297959 13316737 ~ 13337149 (+) True XLOC_022831
TCONS_00045383 mRNA upstream 353977 13277573 ~ 13281131 (+) True XLOC_022830
TCONS_00045381 mRNA upstream 395051 13017586 ~ 13240057 (+) False XLOC_022829
TCONS_00045379 mRNA upstream 619084 12989727 ~ 13016024 (+) False XLOC_022828
TCONS_00045380 mRNA upstream 621318 12989791 ~ 13013790 (+) True XLOC_022828
TCONS_00045388 mRNA downstream 19855 13735616 ~ 13741624 (+) True XLOC_022834
TCONS_00045389 mRNA downstream 153331 13869092 ~ 14013098 (+) False XLOC_022836
TCONS_00045391 mRNA downstream 209305 13925066 ~ 14013229 (+) False XLOC_022836
TCONS_00045392 mRNA downstream 209320 13925081 ~ 14013209 (+) False XLOC_022836
TCONS_00045393 mRNA downstream 209368 13925129 ~ 14015458 (+) False XLOC_022836
TCONS_00045382 other upstream 566728 13017659 ~ 13068380 (+) True XLOC_022829
TCONS_00045367 other upstream 1411448 12157404 ~ 12223660 (+) True XLOC_022818
TCONS_00045358 other upstream 1573756 12058002 ~ 12061352 (+) True XLOC_022814
TCONS_00045354 other upstream 2010241 11622196 ~ 11624867 (+) False XLOC_022810
TCONS_00045390 other downstream 209305 13925066 ~ 13965939 (+) False XLOC_022836
TCONS_00045400 other downstream 635139 14350900 ~ 14351020 (+) True XLOC_022840
TCONS_00045413 other downstream 908070 14623831 ~ 14636303 (+) True XLOC_022846
TCONS_00045414 other downstream 919542 14635303 ~ 14635419 (+) True XLOC_022847
TCONS_00045420 other downstream 1304641 15020402 ~ 15044788 (+) False XLOC_022851

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000018_00509000_00541125.mRNA True 3541 mRNA 0.46 27 CI01000018 508944 ~ 541292 (+)