XLOC_022830 (si:ch211-171b20.3)


Basic Information

Item Value
gene id XLOC_022830
gene name si:ch211-171b20.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 13277573 ~ 13281131 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00045383
ATCAGCTTCCATTATTTACTCTTTTATTTAGCCTTAGCTGAAATGGACCAATTGGCTAGTCTTAACCTATTTAAACGGTATAAAATGACATAGTTTGTTTGTCATCTGAAAGTGAAGATGAAGCCTTATGCCAGCGTCGTTAGACCCAAACTGATGTCACTGCCAATTGAAGCTTCTCTGATGATCCAGGACATTACAGACGCGCGACCCAGTTCAACCTTCAGTCCTCCGGTGTCTGGATATTTCTCCACCGCTGACTCCAGGCTGAACGTTTTCTCTGGGAGACCAACGCACAATTCCAGGGATCTAAAGTTTCACACTGTCAGCTCTGTAAAGGATGGGCCTCTGCTCCCATGTATAGCCAATGATCGTGCAGAATTCACCAAATGTACCTCACAAAACAACATGCCTGACAGGAATATCTCTGGCCGccattttttatttgacaaacgATGGAGAAATGGAACATACATGAAACATGGTATTGAAGAAGATGTTCTGAATAACCACAACCCAGGTGCACTCTCTCAGGAGTTTCATGTTTATCACTCTCACAATTTAACCAAATTTGCCCATCGCAAAGAGCTTTTCCCACGTGACACAAGGCCCCGTATTTGCGATTCTTCTAGGTCTGATTATTTGGAGTCATTTCCATCAATACTGTTACCAGTCACAACTCCCTCTATTAGTGGTCGAGTGTGTCTAtcacaaaactttaaaaacagGACAAGGATGAAAAACAGCCTCTTTCCCATTGATGCTAACAAA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-278 No description available

Ensembl:

ensembl_id ENSDARG00000094794

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00045383 True 768 mRNA 0.42 6 13277573 13281131

Neighbor

gene id symbol gene type direction distance location
XLOC_022829 stau2 coding upstream 37516 13017586 ~ 13240057 (+)
XLOC_022828 flj11011l coding upstream 261549 12989727 ~ 13016024 (+)
XLOC_022827 eloca coding upstream 288724 12983434 ~ 12988849 (+)
XLOC_022826 psme1 coding upstream 323091 12945803 ~ 12954482 (+)
XLOC_022825 si:dkeyp-28d2.4 coding upstream 359243 12894282 ~ 12918330 (+)
XLOC_022831 SBSPON coding downstream 35606 13316737 ~ 13337149 (+)
XLOC_022832 NA coding downstream 74130 13355261 ~ 13600272 (+)
XLOC_022833 trpa1b coding downstream 353977 13635108 ~ 13715761 (+)
XLOC_022834 msc coding downstream 454485 13735616 ~ 13741624 (+)
XLOC_022835 NA coding downstream 477569 13758700 ~ 13764804 (+)
XLOC_022824 NA non-coding upstream 423381 12853386 ~ 12854192 (+)
XLOC_022820 NA non-coding upstream 985038 12291736 ~ 12292535 (+)
XLOC_022817 CU929203.1 non-coding upstream 1145128 12129726 ~ 12132445 (+)
XLOC_022816 NA non-coding upstream 1175435 12095530 ~ 12102138 (+)
XLOC_022814 NA non-coding upstream 1216221 12055030 ~ 12061352 (+)
XLOC_022837 NA non-coding downstream 773965 14055096 ~ 14078636 (+)
XLOC_022840 BX248495.1 non-coding downstream 1069769 14350900 ~ 14351020 (+)
XLOC_022845 NA non-coding downstream 1301113 14582244 ~ 14585809 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000018_00274314_00277424 NA coding CI01000018 null 273928 ~ 277445 (+)