CI01000018_00274314_00277424


Basic Information

Item Value
gene id CI01000018_00274314_00277424
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 273928 ~ 277445 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000018_00274314_00277424.mRNA
ATATAAATGCTGTTTTTTACATTCATACATAAATCCAAGCAAATGTTTACTCATGTTCAATAATAGCCAGGCAAATCATAGTAGCCTACACATGTAAACTAATTCAAACCAACAGCCTATGGTTTATTTATATACACGTGTGTGTTTATTTTTGTATGAGTAAAATCAAATAAAATTGAGTTTATCCTGTCATTAAACTCTTGTGTCACGTGGTTTTGGTAGTAGTAACTACGGCAACGTCGACGCAATGGACTATCAGCTTCCTTTTTTAGTTTCATTGACCGCTATAGGCCTATATTATTGAAATAATGGCGGTAATTATTAGTGTAAACCTACTTAAACGGACTAAAATGACGTTATAGTTTGTCTGACATCCAAAAGTGGAGATGAAGCCTTATACCAGCGTCGTTAGACCCAAACTGATGTCACTGCCAACTGAATCTCGTCTGATAATAAAGGACATTACAGACGCGCGACCCAGTTATTTTTCCAACTACATCTCAAGTCCTCCAGTTTCTGGATGTTACACGGCTGCTGAAACCAGGATGAATGTTTTGTCATCGAGGCAGAAATATCCATGCAGTCCGAGATCAGAAGGCGTTCTGATTAACCACAACCCCACAAGTCCACTTTCTCAGGAGTTCCATGTTTATCGTTCTCACAATTTAACCAGATTTGCCCACCGCAAAGAACTTTCCCCACGCGACCCAAGACCAAATATTTGCGGGTCTGATTATCTGACCTCATTTCCATCAGTTCTGTTACCAGCCACCAGCCCATCTGTCAGTGGACGACTCTGTTTATCACAAAACTATAAAAACAGGCCAAGGGTAACAAACAGAGCTCGCAATCTCATCTCTGTTGGTGCTAACAACAAAACCTGTGGGCCGGTAATTGTTTTTCAGGCCAGTCGTACCCTGATCCACACTTGGGTGCCTCGGCATCTTTTGTTCAGAGGCTTACTGAGATTTCCTGTCTGGAAGCAGAAACAGTCCGGCAGGAGAAAACGAAGAGACTCAGGAAGATCAATAGGCAGGACTCTAAATAGTTCATTAGCCAAAGAGGAAACACATGACACCTGAAATCACAACTGTGCCAAGTAA

Function

NR:

description
hypothetical protein cypCar_00026826

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000018_00274314_00277424.mRNA True 1103 mRNA 0.41 5 273928 277445

Neighbor

gene id symbol gene type direction distance location
CI01000018_00106624_00201928 STAU2 coding upstream 72000 106624 ~ 201928 (+)
CI01000018_00087132_00098513 FLJ11011L, UBE2W coding upstream 175415 87132 ~ 98513 (+)
CI01000018_00085653_00086123 TCEB1B, TCEB1, GM14517, TCEB1A coding upstream 187589 85653 ~ 86339 (+)
CI01000018_00057982_00063287 PSME1 coding upstream 210489 57547 ~ 63439 (+)
CI01000018_00011618_00021513 NA coding upstream 251993 11438 ~ 21935 (+)
CI01000018_00296756_00298858 NA coding downstream 19237 296682 ~ 299116 (+)
CI01000018_00312158_00314088 NA coding downstream 33731 311176 ~ 314889 (+)
CI01000018_00493207_00493553 NA coding downstream 215762 493207 ~ 493704 (+)
CI01000018_00509000_00541125 TRPA1B coding downstream 231499 508944 ~ 541292 (+)
CI01000018_00550871_00552683 MSC coding downstream 273356 550801 ~ 553466 (+)
G102139 NA non-coding upstream 77606 182265 ~ 196322 (+)
G102140 NA non-coding upstream 80937 187962 ~ 192991 (+)
G102131 NA non-coding upstream 100026 143965 ~ 173902 (+)
G102128 NA non-coding upstream 205812 67641 ~ 68116 (+)
G102127 NA non-coding upstream 206410 67228 ~ 67518 (+)
G102298 NA non-coding downstream 217432 494877 ~ 495089 (+)
G102305 NA non-coding downstream 224232 501677 ~ 501931 (+)
G102527 NA non-coding downstream 281508 558953 ~ 559322 (+)
G102544 NA non-coding downstream 297639 575084 ~ 575305 (+)
G102630 NA non-coding downstream 499130 776575 ~ 778299 (+)
G102895 NA other downstream 1305468 1582913 ~ 1585662 (+)
CI01000018_01924489_01985310 SEMA5A other downstream 1691807 1924489 ~ 1985311 (+)
G104258 NA other downstream 3413644 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 4092741 4368179 ~ 4375866 (+)
G104670 NA other downstream 4478356 4755801 ~ 4759768 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_022830 si:ch211-171b20.3 coding NC_007135.7 CM002908.2 13277573 ~ 13281131 (+)