G102298


Basic Information

Item Value
gene id G102298
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000018
NCBI id null
chromosome length 7078422
location 494877 ~ 495089 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU116396
GATGAGTCTCCCCCTACCCAGGTGGAGCCATCCCAGGGACTCCATATGCGTACTGCCCACGGCCAGTCCATATGTGTACTCTCCATGTAAATTCCTCCCCTACGGGTGGGTAGTGGTCTCCGCAGCGTCCCCCATGGGTTCGCTTCCCCAGTGTAGTCTAGTTTACTTAGTGGGTATGTCGGAACAGCAGTAGACTCTCTCGGCGTAAGCTCG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU116396 True 213 lncRNA 0.57 1 494877 495089

Neighbor

gene id symbol gene type direction distance location
CI01000018_00493207_00493553 NA coding upstream 1173 493207 ~ 493704 (+)
CI01000018_00312158_00314088 NA coding upstream 179988 311176 ~ 314889 (+)
CI01000018_00296756_00298858 NA coding upstream 195761 296682 ~ 299116 (+)
CI01000018_00274314_00277424 NA coding upstream 217432 273928 ~ 277445 (+)
CI01000018_00106624_00201928 STAU2 coding upstream 292949 106624 ~ 201928 (+)
CI01000018_00509000_00541125 TRPA1B coding downstream 13855 508944 ~ 541292 (+)
CI01000018_00550871_00552683 MSC coding downstream 55712 550801 ~ 553466 (+)
CI01000018_00641198_00648887 EYA1 coding downstream 146109 641198 ~ 649104 (+)
CI01000018_00653069_00678015 EYA1 coding downstream 157980 653069 ~ 678015 (+)
CI01000018_00791508_00801917 TRAM1 coding downstream 296294 791383 ~ 802946 (+)
G102139 NA non-coding upstream 298555 182265 ~ 196322 (+)
G102140 NA non-coding upstream 301886 187962 ~ 192991 (+)
G102131 NA non-coding upstream 320975 143965 ~ 173902 (+)
G102128 NA non-coding upstream 426761 67641 ~ 68116 (+)
G102127 NA non-coding upstream 427359 67228 ~ 67518 (+)
G102305 NA non-coding downstream 6588 501677 ~ 501931 (+)
G102527 NA non-coding downstream 63864 558953 ~ 559322 (+)
G102544 NA non-coding downstream 79995 575084 ~ 575305 (+)
G102630 NA non-coding downstream 281486 776575 ~ 778299 (+)
G102675 NA non-coding downstream 291908 786997 ~ 787232 (+)
G102895 NA other downstream 1087824 1582913 ~ 1585662 (+)
CI01000018_01924489_01985310 SEMA5A other downstream 1474163 1924489 ~ 1985311 (+)
G104258 NA other downstream 3196000 3691089 ~ 3691519 (+)
CI01000018_04368179_04375192 NA other downstream 3875097 4368179 ~ 4375866 (+)
G104670 NA other downstream 4260712 4755801 ~ 4759768 (+)

Expression


Co-expression Network